Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31008
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11310.1 68417.m01827 cysteine proteinase, putative contains ...    29   3.7  
At1g25170.1 68414.m03125 expressed protein nearly identical to A...    28   6.5  
At1g25097.1 68414.m03119 expressed protein nearly identical to A...    28   6.5  
At1g24996.1 68414.m03115 expressed protein nearly identical to A...    28   6.5  
At1g24822.1 68414.m03109 expressed protein nearly identical to A...    28   6.5  

>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 364

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 573 SDKIHYVADNIPIKAIDYLNKANYTEVIERGH 668
           SD+    AD++  K++D+ N+   TEV ++GH
Sbjct: 126 SDRYKTSADDVLPKSVDWRNEGAVTEVKDQGH 157


>At1g25170.1 68414.m03125 expressed protein nearly identical to
           At1g24996, At1g25097, At1g24822
          Length = 216

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 433 ETSYGTRNRFNSTGTAIRNHSSPSLFAKPCSNGIRFFS 320
           E  Y   NRFN      RN S+PS     C N I F++
Sbjct: 65  EGLYRVDNRFNQDSNTWRNTSAPS----TCKNAINFYN 98


>At1g25097.1 68414.m03119 expressed protein nearly identical to
           At1g24996, At1g25170, At1g24822; similar to ESTs dbj
           AV530941.1, dbj|AV530975.1, gb|BE037999.1,
           gb|BE037993.1, gb|AI995009.1, gb|AI099531.1,
           gb|N37906.1, gb|T76894.1
          Length = 216

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 433 ETSYGTRNRFNSTGTAIRNHSSPSLFAKPCSNGIRFFS 320
           E  Y   NRFN      RN S+PS     C N I F++
Sbjct: 65  EGLYRVDNRFNQDSNTWRNTSAPS----TCKNAINFYN 98


>At1g24996.1 68414.m03115 expressed protein nearly identical to
           At1g25170, At1g25097, At1g24822; similar to ESTs dbj
           AV530941.1, dbj|AV530975.1, gb|BE037999.1,
           gb|BE037993.1, gb|AI995009.1, gb|AI099531.1,
           gb|N37906.1, gb|T76894.1
          Length = 149

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 433 ETSYGTRNRFNSTGTAIRNHSSPSLFAKPCSNGIRFFS 320
           E  Y   NRFN      RN S+PS     C N I F++
Sbjct: 65  EGLYRVDNRFNQDSNTWRNTSAPS----TCKNAINFYN 98


>At1g24822.1 68414.m03109 expressed protein nearly identical to
           At1g24996, At1g25170, At1g25097; similar to ESTs dbj
           AV530941.1, dbj|AV530975.1, gb|BE037999.1,
           gb|BE037993.1, gb|AI995009.1, gb|AI099531.1,
           gb|N37906.1, gb|T76894.1
          Length = 216

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 433 ETSYGTRNRFNSTGTAIRNHSSPSLFAKPCSNGIRFFS 320
           E  Y   NRFN      RN S+PS     C N I F++
Sbjct: 65  EGLYRVDNRFNQDSNTWRNTSAPS----TCKNAINFYN 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,956,374
Number of Sequences: 28952
Number of extensions: 306306
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)