Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31007
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    29   0.59 
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    29   1.0  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   1.0  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    28   1.4  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.8  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    27   3.2  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   7.3  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   7.3  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   7.3  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   9.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.7  

>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 500 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 399
           DLE N +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 631 FVHGGLKVPVVFEGVSGAITVDDTVIT 551
           F H  +    V  G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 437 QQESLLEVYPRVGKQQSLLQDHVHEDKQYLKLDNTKGSSDD 559
           ++  +L ++PR+ +  ++L   +H D Q+L    +   SDD
Sbjct: 211 KKTDMLNLFPRIAEHDAVLSTSLHADPQFLDFLESCFRSDD 251


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 737 LRCAPRLHGLRWRPYLHQVS 678
           L  A +LHG+RW  Y H+VS
Sbjct: 182 LAFASKLHGMRWFMYTHKVS 201


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 112 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 228
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
 Frame = +2

Query: 371 RPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDHVHEDKQYLKLDNTKGS 550
           RP V  P++P+ + +       +++    +   + K      + V E  +   L      
Sbjct: 28  RPTVSMPSQPESSAMLEDDGMVKRKPFAAIGEAIPKVIDTTGESVREAFEEFLLS----F 83

Query: 551 SDDRIIYGDSTADTFKHHWYLEP----SMYESDVMFFVYNR--EYNSVMTL 685
           SDDR+  GD+     +  +Y++     +MYE   ++  Y     YN V+ L
Sbjct: 84  SDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDVLAL 134


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 348 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 440
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +2

Query: 674 VMTLDEDMAANEDR----EALGHSGEVSGYPQLLHG 769
           V+TLDE      +      ++GH+ E   YPQ+LHG
Sbjct: 253 VVTLDEHEGGLRNLLNFGHSIGHAYEAILYPQILHG 288


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -1

Query: 248 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 69
           M F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 68  EASAHTARTKA 36
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = -1

Query: 206 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 45
           +LI SP  S   S ++   V  S       M  L+Y+ S + +S+  A + L+  + T  
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343

Query: 44  TKANKVSLI 18
            + N VSLI
Sbjct: 344 FQENVVSLI 352


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 398  VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 282
            V+L+  + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,388,546
Number of Sequences: 5004
Number of extensions: 71742
Number of successful extensions: 274
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)