Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31007
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 1.1
01_01_0777 - 6017131-6017243,6018069-6018339,6018432-6018617,601... 31 1.1
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901... 30 2.5
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 3.3
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159... 28 7.7
06_01_1082 - 8847795-8848033,8848511-8848724 28 7.7
06_01_0772 + 5770502-5770619,5771035-5772335 28 7.7
05_03_0618 - 16262826-16263097,16263111-16263183 28 7.7
03_02_0950 + 12661008-12662312,12662403-12662576 28 7.7
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 324 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 428
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>01_01_0777 -
6017131-6017243,6018069-6018339,6018432-6018617,
6018703-6018735,6018827-6018925,6019042-6019281,
6019747-6020064,6020197-6020254,6020333-6020389,
6020577-6020792,6020885-6021000
Length = 568
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +2
Query: 542 KGSSDDRIIYGDSTADTFKHHWYLEPSMYESDVMFFVYNREYNSVMTLDEDMAANEDREA 721
+ S D R+I + + + H + M +S M + EYN L++D NE +
Sbjct: 427 ENSDDRRVILNNLSQKMNQDHRFSTEVMEKSLQMMHQHFGEYNRCSALNQDNEKNELKAN 486
Query: 722 LGHSGEVSGYPQLLHGTSSPTKR 790
GHS + +H S KR
Sbjct: 487 NGHSMALEWKRVTIHMYSQRNKR 509
>11_06_0723 -
26688378-26688385,26689351-26689569,26690100-26690106,
26690194-26690256,26690329-26690400,26690507-26691681,
26692024-26692626,26692643-26692781
Length = 761
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 371 RPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDHVHEDKQYLKLDNTK 544
RP R +R L+ + QQES +EV R ++++ ++ + +DKQ + + N++
Sbjct: 580 RPPSLRKQSKLDQVVRRLRMKKQQESTIEVQSR-RRRKTRTKNVISKDKQLINIQNSR 636
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 392 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 306
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>08_02_1416 -
26915306-26915459,26915553-26915668,26915798-26915910,
26915995-26916130,26916219-26916338,26916472-26916648,
26916790-26916862,26916948-26917083,26917179-26918055,
26918138-26918331,26918438-26918620,26918730-26918796,
26918900-26919092,26919317-26919363,26919478-26919574,
26919663-26919790,26919905-26920009,26920763-26920879
Length = 1010
Score = 28.3 bits (60), Expect = 7.7
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 557 DRIIYGDSTADTFKHHWYLEPSMYESDVMFFV-YNREYNSVMTLDEDMAANEDREALGHS 733
DR+ + D T+ + E S+ S +M Y N+ LDE M AN++ LG S
Sbjct: 305 DRLSFIDPEGLTYFKNLLEEDSLKLSLLMLEKEYENAINTKGELDERMFANDEDSLLG-S 363
Query: 734 GEVSGYPQLLHGT 772
G +SG L GT
Sbjct: 364 GSLSGGAINLPGT 376
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 605 WYLEPSMYESDVMFFVYNREYNSV 676
W + Y DV+ F YN+EY+ V
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDV 82
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 248 WTCLPVMDKGWKGNRQILLP--HPV*SDLHRADCQAHKQKGPSRPQV 382
W+ LP+++ G+ G + LP + +D HR C Q R Q+
Sbjct: 399 WSALPLLEIGFAGGAALALPPRNVFYNDPHRGLCMTFAQNPALRSQI 445
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 93 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 7
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 97 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 198
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,604,784
Number of Sequences: 37544
Number of extensions: 482638
Number of successful extensions: 1591
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -