Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31006
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    27   2.6  
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.6  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    27   3.4  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   7.9  

>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 474 SESRGRRVGSAHSSLDEILDQKHTQC 397
           ++ R  R+G AH SL + +D KH  C
Sbjct: 148 NKERFLRIGCAHPSLLDPVDAKHVHC 173


>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 537 IQHPTSCSNPLSFQTNPHPNI 599
           ++ PT  S  L +QT PHP +
Sbjct: 93  MESPTEFSEELEYQTKPHPTV 113


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 294 NTFAIQITIHEKYIKFKYDVPLFNF 220
           N+F+I +T+HE  + F +    F+F
Sbjct: 450 NSFSINMTVHESLLLFTWSTASFDF 474


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 492 LGAVICTISISMYPNIQHPTSCSN 563
           +G+V C   I MYP + H  +C+N
Sbjct: 605 VGSVCCIPLIYMYPPMLHYKACAN 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,828
Number of Sequences: 5004
Number of extensions: 59389
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)