Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31006
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    32   0.38 
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281...    29   3.5  
11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258...    29   3.5  
08_01_1021 + 10310634-10310679,10312880-10313757,10314404-10314640     28   6.2  
05_05_0375 + 24486056-24487333                                         28   6.2  
04_03_0183 + 12352147-12352179,12352390-12353349,12353815-123539...    28   8.2  

>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +3

Query: 348  VDDVGIRQNGMDRMYVSTGYVFDPIFHLNSNAHFQRVARATRSSGPGRLGAVICTIS 518
            +DDV   ++G+  M    GY   P   L   A  +RV     SSG GR   V  T+S
Sbjct: 4688 LDDVEEEEDGLACMVCREGYTLRPTDMLGVYAFSKRVNLGATSSGSGRGDCVYTTVS 4744


>12_01_0368 +
           2815424-2815658,2816898-2817120,2818329-2818680,
           2819354-2819620
          Length = 358

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 667 IYDICAILNSYTYTSYLVDMP 605
           I  +CA+L+++ YT + VDMP
Sbjct: 45  IAGLCALLSAFCYTEFAVDMP 65


>11_01_0345 +
           2579602-2579836,2581262-2581484,2582822-2583173,
           2583894-2584125,2584683-2585266
          Length = 541

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 667 IYDICAILNSYTYTSYLVDMP 605
           I  +CA+L+++ YT + VDMP
Sbjct: 45  IAGLCALLSAFCYTEFAVDMP 65


>08_01_1021 + 10310634-10310679,10312880-10313757,10314404-10314640
          Length = 386

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 416 IKNIPSAYIHSIHSILPYPDIVYTKSLQT 330
           I N+P+  +++I S LP  ++VYT  L T
Sbjct: 44  ISNLPNELLYAIMSTLPALELVYTGMLST 72


>05_05_0375 + 24486056-24487333
          Length = 425

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 556 QLVGCWMFGYILIDIVQMTAPK 491
           ++ GC+ F +IL+D + M+APK
Sbjct: 309 RMAGCFDFHWILLDALDMSAPK 330


>04_03_0183 +
           12352147-12352179,12352390-12353349,12353815-12353998,
           12354087-12354799
          Length = 629

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 396 LHTFDPFHFALSRHRLHEVF--ANFTNTLQVTSED 298
           L  F  F F  S H ++E+F  ++F N LQ   +D
Sbjct: 437 LQVFQSFEFVFSWHMMNEIFETSDFCNALQRREQD 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,633,041
Number of Sequences: 37544
Number of extensions: 377226
Number of successful extensions: 916
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)