Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31006
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3189| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.90 
SB_8050| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_30674| Best HMM Match : K_tetra (HMM E-Value=1.5e-33)               28   8.4  
SB_13978| Best HMM Match : K_tetra (HMM E-Value=1.5e-33)               28   8.4  

>SB_3189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 130 TKSDVIEQYAASPASYKTSVSTAPPSQ*RRGAPS-ARRLGRRG 5
           T  +VIE+  +S    + SVST PP++ R+G    ++ LGR G
Sbjct: 50  TTEEVIEESKSSIVHDEVSVSTTPPTKHRKGRTGRSKGLGRSG 92


>SB_8050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 392 CKHWVCF*SNISSKLECALPTRRPRDSLVR 481
           C HW+   S+IS+ L C++  + P+D L R
Sbjct: 276 CPHWII--SDISTVLACSMVGKAPKDRLCR 303


>SB_30674| Best HMM Match : K_tetra (HMM E-Value=1.5e-33)
          Length = 413

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 556 QLVGCWMFGYILIDIVQMTAPKRP--GPDERVARAT 455
           +LV CW   +ILI I  + A   P   P+E ++ AT
Sbjct: 176 KLVACWSIMFILISIFVICAETIPPENPEELISEAT 211


>SB_13978| Best HMM Match : K_tetra (HMM E-Value=1.5e-33)
          Length = 413

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 556 QLVGCWMFGYILIDIVQMTAPKRP--GPDERVARAT 455
           +LV CW   +ILI I  + A   P   P+E ++ AT
Sbjct: 176 KLVACWSIMFILISIFVICAETIPPENPEELISEAT 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,599,957
Number of Sequences: 59808
Number of extensions: 446197
Number of successful extensions: 1030
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)