Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31006
         (699 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U47924-15|AAB51321.1| 1190|Homo sapiens DRPLA protein.                 30   9.1  
U23851-1|AAB50276.1| 1184|Homo sapiens atrophin-1 protein.             30   9.1  
D38529-1|BAA07534.1| 1182|Homo sapiens DRPLA protein protein.          30   9.1  
D31840-1|BAA06626.1| 1185|Homo sapiens DRPLA protein.                  30   9.1  
BC051795-1|AAH51795.1| 1191|Homo sapiens atrophin 1 protein.           30   9.1  
AB209345-1|BAD92582.1|  774|Homo sapiens atrophin-1 variant prot...    30   9.1  

>U47924-15|AAB51321.1| 1190|Homo sapiens DRPLA protein.
          Length = 1190

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -3

Query: 130 TKSDVIEQYAASPASYKTSVSTAPPSQ*RRGAPS 29
           T S VI   A+SPA YKT+    PP   +R APS
Sbjct: 613 TLSTVIATVASSPAGYKTASPPGPPPYGKR-APS 645


>U23851-1|AAB50276.1| 1184|Homo sapiens atrophin-1 protein.
          Length = 1184

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -3

Query: 130 TKSDVIEQYAASPASYKTSVSTAPPSQ*RRGAPS 29
           T S VI   A+SPA YKT+    PP   +R APS
Sbjct: 607 TLSTVIATVASSPAGYKTASPPGPPPYGKR-APS 639


>D38529-1|BAA07534.1| 1182|Homo sapiens DRPLA protein protein.
          Length = 1182

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -3

Query: 130 TKSDVIEQYAASPASYKTSVSTAPPSQ*RRGAPS 29
           T S VI   A+SPA YKT+    PP   +R APS
Sbjct: 608 TLSTVIATVASSPAGYKTASPPGPPPYGKR-APS 640


>D31840-1|BAA06626.1| 1185|Homo sapiens DRPLA protein.
          Length = 1185

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -3

Query: 130 TKSDVIEQYAASPASYKTSVSTAPPSQ*RRGAPS 29
           T S VI   A+SPA YKT+    PP   +R APS
Sbjct: 608 TLSTVIATVASSPAGYKTASPPGPPPYGKR-APS 640


>BC051795-1|AAH51795.1| 1191|Homo sapiens atrophin 1 protein.
          Length = 1191

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -3

Query: 130 TKSDVIEQYAASPASYKTSVSTAPPSQ*RRGAPS 29
           T S VI   A+SPA YKT+    PP   +R APS
Sbjct: 614 TLSTVIATVASSPAGYKTASPPGPPPYGKR-APS 646


>AB209345-1|BAD92582.1|  774|Homo sapiens atrophin-1 variant
           protein.
          Length = 774

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -3

Query: 130 TKSDVIEQYAASPASYKTSVSTAPPSQ*RRGAPS 29
           T S VI   A+SPA YKT+    PP   +R APS
Sbjct: 197 TLSTVIATVASSPAGYKTASPPGPPPYGKR-APS 229


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,576,193
Number of Sequences: 237096
Number of extensions: 2053475
Number of successful extensions: 3497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3497
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)