Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31006
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.    30   1.8  
AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln (ne...    30   1.8  
AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL110487-11|CAC42369.1|  624|Caenorhabditis elegans Hypothetical...    29   4.2  
AL110487-10|CAC42368.1|  623|Caenorhabditis elegans Hypothetical...    29   4.2  
AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF031837-1|AAC13673.1|  624|Caenorhabditis elegans GLY5c protein.      29   4.2  
AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.      29   4.2  
AF031835-1|AAC13671.1|  623|Caenorhabditis elegans GLY5a protein.      29   4.2  
AF000261-11|AAB52931.1|  268|Caenorhabditis elegans Hypothetical...    28   5.6  
Z83236-1|CAB05777.1|  445|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 387 MYVSTGYVFDPIFHLNSNAHFQRVARATRSSGPGRLG 497
           ++VS G     I  L  +AH+QR+A A  SSG G  G
Sbjct: 125 VFVSLGGGLGEITFLGLSAHYQRIAIAGWSSGTGMAG 161


>AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln
           (neuronal ceroid lipofuscinosis)related protein 3.3
           protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 387 MYVSTGYVFDPIFHLNSNAHFQRVARATRSSGPGRLG 497
           ++VS G     I  L  +AH+QR+A A  SSG G  G
Sbjct: 125 VFVSLGGGLGEITFLGLSAHYQRIAIAGWSSGTGMAG 161


>AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical
           protein T23E7.2e protein.
          Length = 908

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = -3

Query: 133 ITKSDVIEQYAASPASYKTSVSTAPPSQ*RRGAPSARR 20
           I K++V+E+ +A PA+ ++S S  PP++ R  +PS  R
Sbjct: 561 IEKTEVVEEESAPPAARQSSPS-PPPARRRPQSPSPER 597


>AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical
           protein T23E7.2b protein.
          Length = 880

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = -3

Query: 133 ITKSDVIEQYAASPASYKTSVSTAPPSQ*RRGAPSARR 20
           I K++V+E+ +A PA+ ++S S  PP++ R  +PS  R
Sbjct: 511 IEKTEVVEEESAPPAARQSSPS-PPPARRRPQSPSPER 547


>AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical
           protein T23E7.2c protein.
          Length = 885

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = -3

Query: 133 ITKSDVIEQYAASPASYKTSVSTAPPSQ*RRGAPSARR 20
           I K++V+E+ +A PA+ ++S S  PP++ R  +PS  R
Sbjct: 561 IEKTEVVEEESAPPAARQSSPS-PPPARRRPQSPSPER 597


>AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical
           protein T23E7.2a protein.
          Length = 930

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = -3

Query: 133 ITKSDVIEQYAASPASYKTSVSTAPPSQ*RRGAPSARR 20
           I K++V+E+ +A PA+ ++S S  PP++ R  +PS  R
Sbjct: 561 IEKTEVVEEESAPPAARQSSPS-PPPARRRPQSPSPER 597


>AL110487-11|CAC42369.1|  624|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12c protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 197 NGIHLSEVWFTN*ILFYFARLNHKVG 120
           N I L+EVW  +   +Y+ R+N+++G
Sbjct: 424 NSIRLAEVWLDDYKTYYYERINNQLG 449


>AL110487-10|CAC42368.1|  623|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12b protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 197 NGIHLSEVWFTN*ILFYFARLNHKVG 120
           N I L+EVW  +   +Y+ R+N+++G
Sbjct: 424 NSIRLAEVWLDDYKTYYYERINNQLG 449


>AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12a protein.
          Length = 626

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 197 NGIHLSEVWFTN*ILFYFARLNHKVG 120
           N I L+EVW  +   +Y+ R+N+++G
Sbjct: 424 NSIRLAEVWLDDYKTYYYERINNQLG 449


>AF031837-1|AAC13673.1|  624|Caenorhabditis elegans GLY5c protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 197 NGIHLSEVWFTN*ILFYFARLNHKVG 120
           N I L+EVW  +   +Y+ R+N+++G
Sbjct: 424 NSIRLAEVWLDDYKTYYYERINNQLG 449


>AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.
          Length = 626

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 197 NGIHLSEVWFTN*ILFYFARLNHKVG 120
           N I L+EVW  +   +Y+ R+N+++G
Sbjct: 424 NSIRLAEVWLDDYKTYYYERINNQLG 449


>AF031835-1|AAC13671.1|  623|Caenorhabditis elegans GLY5a protein.
          Length = 623

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 197 NGIHLSEVWFTN*ILFYFARLNHKVG 120
           N I L+EVW  +   +Y+ R+N+++G
Sbjct: 424 NSIRLAEVWLDDYKTYYYERINNQLG 449


>AF000261-11|AAB52931.1|  268|Caenorhabditis elegans Hypothetical
           protein F19B10.1 protein.
          Length = 268

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 486 PGRTSESRGRRVGSAHSSLDEILDQKHTQCLHTFDPFHF 370
           P      RG  + SAHSS D   D + TQC  + D  +F
Sbjct: 201 PSPAKRLRGLNLRSAHSSSDSESDFQDTQCEDSQDSDYF 239


>Z83236-1|CAB05777.1|  445|Caenorhabditis elegans Hypothetical
           protein K10H10.1 protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 592 GWGFV*KDKGLEQLVGCWMFGYILIDIVQMTAPKRPGPDERV 467
           GW  + +  G+  L+ CW+F ++L           P PDE V
Sbjct: 183 GWRALFQFVGIISLIWCWVFRWVLDRAKGPGGRSSPLPDEEV 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,053,176
Number of Sequences: 27780
Number of extensions: 338321
Number of successful extensions: 753
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)