Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31006
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02700.1 68415.m00210 DC1 domain-containing protein contains ...    30   1.7  
At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to al...    29   3.9  
At2g22990.5 68415.m02735 sinapoylglucose:malate sinapoyltransfer...    28   6.8  
At2g22990.4 68415.m02733 sinapoylglucose:malate sinapoyltransfer...    28   6.8  
At2g22990.3 68415.m02736 sinapoylglucose:malate sinapoyltransfer...    28   6.8  
At2g22990.2 68415.m02737 sinapoylglucose:malate sinapoyltransfer...    28   6.8  
At2g22990.1 68415.m02734 sinapoylglucose:malate sinapoyltransfer...    28   6.8  
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ...    27   9.0  

>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 499

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 429 LNSNAHFQRVARATRSSGPGRLGAVICTISISMYPNIQHPTSCSNPLSFQTNPHP 593
           ++ N  F+  A   +SSG G     +CTI+   Y       S S P ++Q +PHP
Sbjct: 426 VHENHEFECAACMRKSSGFG----YVCTINGCDYELDAVCASASEPFNYQVHPHP 476


>At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to
           alpha-xylosidase precursor GB:AAD05539 GI:4163997 from
           [Arabidopsis thaliana]; contains Pfam profile PF01055:
           Glycosyl hydrolases family 31; identical to cDNA
           alpha-xylosidase precursor (XYL1) partial cds GI:4163996
          Length = 915

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 462 GRRVGSAHSSLDEILDQKHTQCL--HTFDPFHFALSRHRLHEVFANFTNTL 316
           G+ +G +  S   + +   ++ +  +T DPF FA+ R   HE   N T++L
Sbjct: 108 GKVIGKSRKSPITVQEISGSELIFSYTTDPFTFAVKRRSNHETLFNTTSSL 158


>At2g22990.5 68415.m02735 sinapoylglucose:malate sinapoyltransferase
           (SNG1) similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]; contains Pfam profile
           PF00450: Serine carboxypeptidase; identical to cDNA
           sinapoylglucose:malate sinapoyltransferase (SNG1)
           GI:8699618
          Length = 433

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 420 LDQKHTQCLHTFDPFHFALSRHRLHEVFANFTNTLQVTSED 298
           +D  +TQCL   + +H   ++  +H +     +   VTS D
Sbjct: 248 VDPSNTQCLKLTEEYHKCTAKINIHHILTPDCDVTNVTSPD 288


>At2g22990.4 68415.m02733 sinapoylglucose:malate sinapoyltransferase
           (SNG1) similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]; contains Pfam profile
           PF00450: Serine carboxypeptidase; identical to cDNA
           sinapoylglucose:malate sinapoyltransferase (SNG1)
           GI:8699618
          Length = 416

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 420 LDQKHTQCLHTFDPFHFALSRHRLHEVFANFTNTLQVTSED 298
           +D  +TQCL   + +H   ++  +H +     +   VTS D
Sbjct: 248 VDPSNTQCLKLTEEYHKCTAKINIHHILTPDCDVTNVTSPD 288


>At2g22990.3 68415.m02736 sinapoylglucose:malate sinapoyltransferase
           (SNG1) similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]; contains Pfam profile
           PF00450: Serine carboxypeptidase; identical to cDNA
           sinapoylglucose:malate sinapoyltransferase (SNG1)
           GI:8699618
          Length = 458

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 420 LDQKHTQCLHTFDPFHFALSRHRLHEVFANFTNTLQVTSED 298
           +D  +TQCL   + +H   ++  +H +     +   VTS D
Sbjct: 248 VDPSNTQCLKLTEEYHKCTAKINIHHILTPDCDVTNVTSPD 288


>At2g22990.2 68415.m02737 sinapoylglucose:malate sinapoyltransferase
           (SNG1) similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]; contains Pfam profile
           PF00450: Serine carboxypeptidase; identical to cDNA
           sinapoylglucose:malate sinapoyltransferase (SNG1)
           GI:8699618
          Length = 319

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 420 LDQKHTQCLHTFDPFHFALSRHRLHEVFANFTNTLQVTSED 298
           +D  +TQCL   + +H   ++  +H +     +   VTS D
Sbjct: 134 VDPSNTQCLKLTEEYHKCTAKINIHHILTPDCDVTNVTSPD 174


>At2g22990.1 68415.m02734 sinapoylglucose:malate sinapoyltransferase
           (SNG1) similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]; contains Pfam profile
           PF00450: Serine carboxypeptidase; identical to cDNA
           sinapoylglucose:malate sinapoyltransferase (SNG1)
           GI:8699618
          Length = 433

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 420 LDQKHTQCLHTFDPFHFALSRHRLHEVFANFTNTLQVTSED 298
           +D  +TQCL   + +H   ++  +H +     +   VTS D
Sbjct: 248 VDPSNTQCLKLTEEYHKCTAKINIHHILTPDCDVTNVTSPD 288


>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 580

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 97  SPASYKTSVSTAPPSQ*RRGAPSARRLG 14
           SP +Y + VST P S    G PS+ R G
Sbjct: 338 SPLAYSSGVSTPPVSPMANGVPSSPRNG 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,735,512
Number of Sequences: 28952
Number of extensions: 299076
Number of successful extensions: 684
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)