Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31005X
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   0.84 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   0.84 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.5  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   1.5  
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy...    27   1.9  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   2.6  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   2.6  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   3.4  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   5.9  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   5.9  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   7.9  

>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 298 SAADHAQLTDLLLSEHGELIQTLDL-ADEQAKIQQKMNELKAEVDSKDQDIYHLQRQLK 471
           S  DH  L D +L ++  L++T  L  DE  +  +   ELKA  + ++QD+Y+    LK
Sbjct: 224 SLDDH--LVDKVLFDY--LVRTYHLYLDESPEESEPEKELKATFNQQNQDLYNQTEALK 278


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +1

Query: 376 DEQAKIQQKMNELK---AEVDSKDQDIYHLQRQLKD 474
           D +A +    NELK   A +D KDQ++ +L+ Q+K+
Sbjct: 466 DLRACLNSSSNELKEKSALIDKKDQELNNLREQIKE 501


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -3

Query: 318 LSMICSGHFLWFWCYGNFYYFLAXXXXXXXSANKRSLVLKCDAIALYSLTAFFN 157
           L+ I S  F W WC+ +  Y +         ++   +++    I LY  TAF N
Sbjct: 318 LAGIFSSIFFWVWCH-SLLYIVPKTLPIKPLSSLLFVLISFTCIGLYVRTAFQN 370


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -3

Query: 207  VLKCDAIALYSLTAFFNINDMYYFLISYELDKRPPNAATLGISCIKNATMYVVTTFNVY 31
            ++  D I  YS+ +FF  N       S+E  KR     +LG + I N+ +Y V     Y
Sbjct: 967  IVNLDTIKGYSVLSFFRENHKNSLRKSWEAFKRRAFWTSLGFA-INNSLLYFVRALLFY 1024


>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 8/28 (28%), Positives = 22/28 (78%)
 Frame = +1

Query: 388 KIQQKMNELKAEVDSKDQDIYHLQRQLK 471
           ++Q K++ELK++ ++KD+++  L+  ++
Sbjct: 55  ELQSKLSELKSKYEAKDKEVAELKGSIR 82


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +1

Query: 343 HGELIQTLDLADEQAKIQQKMNELKAEVDSKDQDIYHLQRQLKD 474
           + +L Q  +L +E+ K+Q+K+NE ++ + S+  DI    R+ +D
Sbjct: 637 NAQLSQLENLQNEERKLQEKVNEHESLL-SRTNDILSTLRKERD 679


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
 Frame = +1

Query: 295 VSAADHAQLTDLLLSEH-GELIQ-TLDLADEQ---AKIQQKMN-ELKAEVDSKDQDIYHL 456
           VSAADH +L ++L + + G+ +Q  L +  ++   A++Q K+N E++ ++  + ++ Y L
Sbjct: 393 VSAADHRELQEVLEATNIGDRLQKALYVLKKELLNAQLQHKINKEIEQKITQRHKE-YLL 451

Query: 457 QRQLK 471
             QLK
Sbjct: 452 TEQLK 456


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 259 IIEVSIAPKPQKVSAADHAQLTDLLLSEHGELIQTLDLADEQAKIQQKMNELKAEVDSK 435
           II   I P    V    H +LTD  LSE+ E  + +    ++   +QK   L  ++  K
Sbjct: 648 IIHHDIKPANMLVDETGHIRLTDFGLSENVEEKKEVYKLTKRMSFEQKHGNLYEQLQPK 706


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 140 ISLYHMNWTNDPPTLRLLGFLVSK 69
           IS+Y  N  +D P L LL  L++K
Sbjct: 443 ISIYQKNHVHDSPALDLLQSLITK 466


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 322 TDLLLSEHGEL-IQTLDLADEQAKIQQKMNELKAE 423
           TD    E G L      LA EQAKIQQ + + KAE
Sbjct: 258 TDEFHYEQGNLGFHQRQLAREQAKIQQWIAKRKAE 292


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 102 WGVVCPVHMI*GNNTY 149
           WGV+ P  M  G NTY
Sbjct: 626 WGVIGPKRMFSGKNTY 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,615
Number of Sequences: 5004
Number of extensions: 34417
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)