Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31005X
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0810 - 7857946-7858422                                           30   1.1  
11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,443...    29   2.6  
09_04_0285 + 16390786-16391291,16391370-16391957,16392034-163921...    28   3.4  

>08_01_0810 - 7857946-7858422
          Length = 158

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 298 SAADHAQLTDLLLSEHGELIQTLDLADEQAKIQQKMNELKAEVDSKDQDIYHLQRQLKD 474
           S+ DH++   LL  EH         A  +AK++ +  EL A +D KD +    Q +++D
Sbjct: 60  SSDDHSEF--LLSPEHRNQDDDDGFAAFEAKVRAQREELSAFLDKKDDEFAVFQAKVRD 116


>11_01_0563 +
           4423609-4423846,4424671-4426132,4428949-4429364,
           4430555-4432052,4432199-4432217,4432469-4432675,
           4432814-4433065
          Length = 1363

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 195 DAIALYSLTAFFNINDMYYFLISYELDKRPPNAATLGISCIKNATMY 55
           DA A+  L     IN+     I+Y LDK PP  A+ G + ++   ++
Sbjct: 798 DAAAIAGLNVMRIINEPSAAAIAYGLDKMPPPPASGGGAAVRTVLIF 844


>09_04_0285 +
           16390786-16391291,16391370-16391957,16392034-16392160,
           16392291-16392477,16392585-16392741,16392847-16393201
          Length = 639

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 316 QLTDLLLSEHGELIQTLDLADEQAKIQQKMNELKAEVDS 432
           Q+ D+L        Q+ ++AD QAK+++   E++  +D+
Sbjct: 236 QIDDVLAHSKAIFEQSKEIADSQAKLREGQTEMRETIDA 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,316
Number of Sequences: 37544
Number of extensions: 188679
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)