Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31004
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    29   0.51 
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    29   0.51 
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    29   0.51 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    29   0.68 
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    26   6.3  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   8.3  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = -2

Query: 241 QITVEQGLHIVVALGASAGREHQRPRQLDIHRVRPHRHHYRKIFHQAYPDD---VDAPVR 71
           Q TV++G+H  VA         +RP+ L++ R +P ++  + + H +  D+   +  P+ 
Sbjct: 10  QKTVQKGIHNKVARKVRTSTTFRRPKTLELAR-KP-KYARKSVPHASRLDEYKIIVNPIN 67

Query: 70  NEEVLQNVEVGNQMKNQSH 14
           +E  ++ +E  N +    H
Sbjct: 68  SESAMKKIEDDNTLVFHVH 86


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 621 LHLKLVNQANAVQNTNISYETNTHIYNLKK 532
           L    + Q N V+N N+S+ +   +Y+LKK
Sbjct: 869 LSSSFIQQLNTVENLNLSFNSTDAVYHLKK 898


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 10/44 (22%), Positives = 18/44 (40%)
 Frame = -2

Query: 193 SAGREHQRPRQLDIHRVRPHRHHYRKIFHQAYPDDVDAPVRNEE 62
           S    +      D+H    H HH+    H ++ DD  +P   ++
Sbjct: 281 STNHHNNHESDKDLHHEGHHHHHHHHHHHHSHDDDPSSPAEKKQ 324


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = -2

Query: 241 QITVEQGLHIVVALGASAGREHQRPRQLDIHRVRPHRHHYRKIFHQAYPDD---VDAPVR 71
           Q TV++G+H  VA         +RP+ L + R +P ++  + + H    D+   +  P+ 
Sbjct: 10  QKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSR-KP-KYARKSVAHAPRLDEYKIIVNPIN 67

Query: 70  NEEVLQNVEVGNQMKNQSH 14
           +E  ++ +E  N +    H
Sbjct: 68  SESAMKKIEDDNTLVFHVH 86


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 15 WLWFFIWFP 41
          WL+FFIW+P
Sbjct: 72 WLYFFIWYP 80


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = +2

Query: 305 YITLSLGDINNQMIQKNILTLCAPIKFIIQDLSTVKG*NYKYNLFNSQMRCL*LLVFVFK 484
           Y  +S+   ++Q+ + NILT C  + +  +  S     N  Y L  S+ + +  L  + +
Sbjct: 203 YAQMSVSACSSQLERANILTTC--LSYFTEHKSV----NLLYKLVTSR-QAIKYLEHILR 255

Query: 485 CNTFEMRGFSYLPVLNFF 538
            NT   + F+  PV N +
Sbjct: 256 TNTNGSKIFTKSPVKNLY 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,116
Number of Sequences: 5004
Number of extensions: 57056
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)