Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31004
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1110 + 26154024-26154314,26154400-26154944,26155023-261551...    34   0.100
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601           32   0.53 
04_04_1042 - 30346132-30346285,30346629-30346759,30346867-303469...    29   3.8  
05_02_0049 - 6083364-6084111,6084140-6084246                           28   8.7  

>12_02_1110 +
           26154024-26154314,26154400-26154944,26155023-26155109,
           26155237-26155293,26155369-26155607,26155715-26155833,
           26155945-26156031,26156117-26156194
          Length = 500

 Score = 34.3 bits (75), Expect = 0.100
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 78  GASTSSGYAWWKILR*WCRWGRTLWISSCRGRWCSLPALAPR 203
           GA+ +  ++WW ++     WG  +W  +C+  W  L  LA R
Sbjct: 223 GAALTLSFSWWVLVA--LTWGLMVWTPACKETWTGLSVLAFR 262


>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
          Length = 390

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -2

Query: 217 HIVVALGASAGREHQRPRQLDIHRVRPHRHHYRKIFHQAYPDDVDAPVRNEEVLQNVEVG 38
           H VV  G   G EH+    +  H    H H    +      DD +  +R+  + Q +E+G
Sbjct: 185 HHVVGDGGGGGEEHEGQVHVHTHATHGHAHGSSALVAAVGEDDKETTLRHRVISQVLELG 244


>04_04_1042 -
           30346132-30346285,30346629-30346759,30346867-30346938,
           30347284-30347370,30347479-30347505,30347777-30347869,
           30348470-30348558,30348649-30348727,30349102-30349231,
           30349344-30349464,30349619-30349726,30349837-30350152
          Length = 468

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 467 LVFVFKCNTFEMRGFSYLPVLN 532
           LVF F CN F++  F  LPVL+
Sbjct: 49  LVFAFSCNLFQLVLFEILPVLS 70


>05_02_0049 - 6083364-6084111,6084140-6084246
          Length = 284

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 168 HGSLISTGSAPTDTTTVKFSTKHILMMWMHLCVMRRCCKMWRW 40
           +G++++   AP D+ T   +T   +    H C +R   K+W+W
Sbjct: 241 NGTVLAPAPAPADSDTAA-TTAATVSTAAHSCKVRVRVKIWKW 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,373,804
Number of Sequences: 37544
Number of extensions: 316104
Number of successful extensions: 729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)