Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31004
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.54 
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)                     28   8.9  
SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)                    28   8.9  

>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -3

Query: 558 NTHIYNLKKFNTGR*ENPLISNVLHLNTNTNSYKHLICELNKLYL 424
           NTHI++  + NT   ++PL+SN +  +   N++K     LN  ++
Sbjct: 421 NTHIFDSPRHNTNIFDSPLLSNHIFDSPRNNTHKFDCTRLNNTHI 465


>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1230

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 157 DIHRVRPHRHHYRKIFHQAYPDDVDAPVRNE 65
           DI+R   H + YR ++H  YPD+ +   R +
Sbjct: 217 DIYRAL-HHNIYRALYHNIYPDEKECEKRRD 246


>SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)
          Length = 434

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 721 LNFC--CRSIKYNFLNV*IILCFWNIIVIFRTQIIIAF 614
           L FC  C SI    + + II+   N+IVIF   III F
Sbjct: 176 LGFCYRCLSIIIIIVTIIIIIIIVNVIVIFTIIIIIIF 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,792,967
Number of Sequences: 59808
Number of extensions: 402024
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)