Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31004
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    30   1.5  
X91803-1|CAA62913.1|  880|Caenorhabditis elegans sodium-calcium ...    29   3.4  
AL132858-14|CAJ90511.1|  873|Caenorhabditis elegans Hypothetical...    29   3.4  
AL132858-13|CAB60477.1|  880|Caenorhabditis elegans Hypothetical...    29   3.4  
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 208 VALGASAGREHQRPRQLDIHRVRPHRHHYRKI-FHQAYP 95
           +AL   A REH   R+ +   VR HRHH+R +  H   P
Sbjct: 40  LALSRRALREHSLCRRDENGTVRTHRHHHRAVAAHNTVP 78


>X91803-1|CAA62913.1|  880|Caenorhabditis elegans sodium-calcium
           exchanger protein.
          Length = 880

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 136 HRHHYRKIFHQAYPDDVDAP-VRNEEVLQNVEVGNQMKNQSHW 11
           HR HY  IF Q   +  DAP V  E+      VG Q K+++ +
Sbjct: 311 HRRHYLDIFKQLRSEHPDAPVVELEKHAMEKVVGEQKKSRAFY 353


>AL132858-14|CAJ90511.1|  873|Caenorhabditis elegans Hypothetical
           protein Y113G7A.4b protein.
          Length = 873

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 136 HRHHYRKIFHQAYPDDVDAP-VRNEEVLQNVEVGNQMKNQSHW 11
           HR HY  IF Q   +  DAP V  E+      VG Q K+++ +
Sbjct: 311 HRRHYLDIFKQLRSEHPDAPVVELEKHAMEKVVGEQKKSRAFY 353


>AL132858-13|CAB60477.1|  880|Caenorhabditis elegans Hypothetical
           protein Y113G7A.4a protein.
          Length = 880

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 136 HRHHYRKIFHQAYPDDVDAP-VRNEEVLQNVEVGNQMKNQSHW 11
           HR HY  IF Q   +  DAP V  E+      VG Q K+++ +
Sbjct: 311 HRRHYLDIFKQLRSEHPDAPVVELEKHAMEKVVGEQKKSRAFY 353


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 67  HYAQVHPHHQDM 102
           HY Q HPHHQ M
Sbjct: 764 HYTQPHPHHQQM 775


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,297,046
Number of Sequences: 27780
Number of extensions: 320463
Number of successful extensions: 845
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)