Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31004
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20840.1 68416.m02635 ovule development protein, putative sim...    28   5.5  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    28   7.2  

>At3g20840.1 68416.m02635 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099)[Arabidopsis thaliana]
          Length = 529

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 591 AVQNTNISYETNTHIYNLKKFNTGR*ENPLISNVLHLNTNTNSY 460
           ++QN +IS+  N + ++   FN     +  I   LHL+  TN+Y
Sbjct: 379 SLQNNDISHYNNNNAHDSSSFN----HHSYIQTQLHLHQQTNNY 418


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 142 RPHRHHYRKIFHQAYPDDVDAPVRNEEVLQN 50
           R HR   +   H  YPDD D P  N  VL++
Sbjct: 82  RTHRLERQTNQHSVYPDDDDLPYSNLGVLES 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,880,690
Number of Sequences: 28952
Number of extensions: 275123
Number of successful extensions: 582
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)