Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31003
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.67 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   1.6  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   3.6  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +2

Query: 59  LSRSVKLCNTRLED--DELQGLPPRHQGLVRSQVPHTWNYSALHVHESVQSW 208
           LS+ + + N    D      G+   H GL  S V  T N   L V  +++ W
Sbjct: 195 LSKYLDIINVMAYDLRGSWDGVTGHHSGLYPSAVDTTTNQKLLTVDAAIRGW 246


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +2

Query: 155 PHT-WNYSALHVHESVQSWRHCRHQRQWCSSKGYAHKV-YHGKTGRVYNV-TAHALGVIV 325
           PH  W Y  L+V++ +Q W         CS K     + ++G+T  + N  T +  G  +
Sbjct: 234 PHDQWAYEKLNVNDGLQLW-----VDYGCSPKKLIVGIPFYGRTFTLSNSNTNYNPGTYI 288

Query: 326 NKRVRG 343
           NK   G
Sbjct: 289 NKEAGG 294


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 591 IFYWTLRYEFVWDR 550
           ++YW  +YE  W R
Sbjct: 119 VYYWRQQYEDFWHR 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,918
Number of Sequences: 336
Number of extensions: 2855
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)