Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31003
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 129 3e-31
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 127 1e-30
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 29 0.41
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 28 0.94
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 1.2
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 27 1.6
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 2.9
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 2.9
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.9
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 26 3.8
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 3.8
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 26 5.0
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 6.6
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 6.6
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 6.6
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 6.6
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 6.6
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 6.6
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 6.6
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 6.6
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 6.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 6.6
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 6.6
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 6.6
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 6.6
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 8.8
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 25 8.8
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 8.8
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 129 bits (312), Expect = 3e-31
Identities = 63/99 (63%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Frame = +2
Query: 245 KGYAHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRV 424
KG HK YHGKTG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RV
Sbjct: 50 KGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRV 109
Query: 425 KENERLLKEAKAAGKTVNLKRQPAPP-KAPTSSVELRNP 538
K NE KEAKA GKTV L+RQPAPP KA S E P
Sbjct: 110 KANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEP 148
Score = 74.1 bits (174), Expect = 1e-14
Identities = 37/56 (66%), Positives = 40/56 (71%)
Frame = +3
Query: 99 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMHTKY 266
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGM KY
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKY 56
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 127 bits (307), Expect = 1e-30
Identities = 58/86 (67%), Positives = 67/86 (77%)
Frame = +2
Query: 245 KGYAHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRV 424
KG HK YHGKTG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RV
Sbjct: 50 KGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRV 109
Query: 425 KENERLLKEAKAAGKTVNLKRQPAPP 502
K NE KEAKA GKTV L+RQPAPP
Sbjct: 110 KANEAKRKEAKAQGKTVQLRRQPAPP 135
Score = 74.1 bits (174), Expect = 1e-14
Identities = 37/56 (66%), Positives = 40/56 (71%)
Frame = +3
Query: 99 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMHTKY 266
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGM KY
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKY 56
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 29.5 bits (63), Expect = 0.41
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 416 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAPTSSVELRNP 538
K +++ ER+ K + NL+R PPK PT S P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 28.3 bits (60), Expect = 0.94
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = +2
Query: 428 ENERLLKEAKAAGKTVNLKRQPAPPKAPTSSV-----ELRNPSYLR 550
EN R KEA + G R P PK P+S+ ELRN LR
Sbjct: 123 ENRRRSKEAHSTGSRYYRLRHPDVPKKPSSAFILFYKELRNNPKLR 168
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 211 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 95
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 27.5 bits (58), Expect = 1.6
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +3
Query: 9 NASLFFSGQHSIDETNLFLDPSSFVT-QGSKMTNSKGYRRGTRDLFARRF--RTHGTIPL 179
+ASLF S E L+P + VT + M + Y D +F R + P+
Sbjct: 56 DASLFSLVPQSPSEHLTTLEPIAKVTIRDPSMQVQRPYTPLYLDANELKFFIRKYEEGPV 115
Query: 180 STYMKVYKVGDIVDIRGNGAVQKGMHTKY 266
S+Y+ K GD +++RG K TKY
Sbjct: 116 SSYIHSKKEGDTIELRGPFKTTKLDCTKY 144
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 227 RQWCSSKGYAHKVYHGKTGRVYNVT 301
R W +S G V G GRVY+VT
Sbjct: 600 RVWKASTGVCLHVLRGHVGRVYSVT 624
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -2
Query: 109 EFVIFEPCVTKLDG 68
EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 422 VKENERLLKEAKAAGKTVNLKRQPAPPKAPTSSVELRNPS 541
V E + + + + V+L +P P APTS+V + NP+
Sbjct: 389 VPEEASINEHSNITDEAVSLP-EPVYPNAPTSAVSVHNPT 427
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 395 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAPTS 517
K DF KR E +R+ +E A KTV L Q K T+
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQERHIKTKTT 221
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.2 bits (55), Expect = 3.8
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -2
Query: 469 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 305
+A SLG Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 24 FSGQHSIDETNLFLDPSS 77
F GQH + TN F DP+S
Sbjct: 447 FKGQHEVAGTNSFEDPNS 464
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 365 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRN 535
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 536 PSY 544
+Y
Sbjct: 409 ENY 411
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 365 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRN 535
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 536 PSY 544
+Y
Sbjct: 409 ENY 411
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 365 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRN 535
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 536 PSY 544
+Y
Sbjct: 409 ENY 411
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 365 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRN 535
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 536 PSY 544
+Y
Sbjct: 409 ENY 411
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 365 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRN 535
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 536 PSY 544
+Y
Sbjct: 409 ENY 411
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 428 ENERLLKEAKAAGKTVNLKRQPAPPKAPTSSVELRNPSYLRLS 556
E E + ++ A TVNL + PT V + P+Y R S
Sbjct: 400 EQESDIPQSDANDSTVNLNQPNYANLTPTPQVSPKRPTYSRSS 442
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 365 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRN 535
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 536 PSY 544
+Y
Sbjct: 409 ENY 411
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 365 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRN 535
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 536 PSY 544
+Y
Sbjct: 409 ENY 411
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 365 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRN 535
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 536 PSY 544
+Y
Sbjct: 409 ENY 411
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 365 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRN 535
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 536 PSY 544
+Y
Sbjct: 409 ENY 411
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 364 DALRYNPSANTLVDNHTES 308
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 365 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRN 535
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 536 PSY 544
+Y
Sbjct: 409 ENY 411
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 365 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRN 535
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 536 PSY 544
+Y
Sbjct: 409 ENY 411
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +2
Query: 443 LKEAKAAGKTVN---LKRQPAPPKAPTSSVELRNPSYL 547
L E KA +T+ P PP +V L NPSY+
Sbjct: 93 LPEGKAGMQTLPGRPASNGPTPPNPGNGNVGLNNPSYM 130
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 8.8
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +3
Query: 36 HSIDETNLFLDPSSFVTQ--GSKMTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVG 209
H I +F D V Q G N K + + R + T L +Y+ VYK G
Sbjct: 199 HCITVNGVFDDCQDLVKQIFGDVEFNKKHHIGAVNSINWARILSQITYYLYSYLSVYKQG 258
Query: 210 DIVDIR 227
D+R
Sbjct: 259 KADDVR 264
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 8.8
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = -2
Query: 508 SFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLNTDIDALRYN 347
SF+G W+ L + + G L G LQ + +++SL EV ++ + L+ ++RY+
Sbjct: 455 SFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLSRAFGSIRYS 512
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,791
Number of Sequences: 5004
Number of extensions: 47894
Number of successful extensions: 194
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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