Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31003
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 104 5e-23
03_01_0290 + 2246791-2247027,2248089-2248346 102 3e-22
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 28 5.2
02_01_0742 + 5524149-5524214,5524609-5524641,5524750-5524880,552... 28 5.2
10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007 28 6.8
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 6.8
01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999 28 6.8
09_01_0142 - 2103224-2103864,2104264-2104399 27 9.0
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042... 27 9.0
04_04_0823 + 28383798-28383864,28384475-28384877,28387388-283879... 27 9.0
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 27 9.0
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 9.0
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 27 9.0
01_06_1794 - 39919363-39920025 27 9.0
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 104 bits (250), Expect = 5e-23
Identities = 47/87 (54%), Positives = 65/87 (74%)
Frame = +2
Query: 245 KGYAHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRV 424
KG HK YHG+TGRV+NVT A+GV +NK+V RII KRI++RVEHV+ S+C ++F R
Sbjct: 50 KGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRK 109
Query: 425 KENERLLKEAKAAGKTVNLKRQPAPPK 505
+N++L +AKA G+ ++ KRQP PK
Sbjct: 110 IKNDQLKADAKARGEVISTKRQPQGPK 136
Score = 67.7 bits (158), Expect = 7e-12
Identities = 31/56 (55%), Positives = 39/56 (69%)
Frame = +3
Query: 99 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMHTKY 266
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGM K+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKF 56
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 102 bits (244), Expect = 3e-22
Identities = 46/87 (52%), Positives = 64/87 (73%)
Frame = +2
Query: 245 KGYAHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRV 424
KG HK YHG+TGRV+NVT A+GV +NK+V RII KRI++RVEHV+ S+C ++ R
Sbjct: 50 KGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRK 109
Query: 425 KENERLLKEAKAAGKTVNLKRQPAPPK 505
+N++L +AKA G+ ++ KRQP PK
Sbjct: 110 IKNDQLKADAKARGEVISTKRQPEGPK 136
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/56 (57%), Positives = 39/56 (69%)
Frame = +3
Query: 99 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMHTKY 266
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGM K+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKF 56
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 292 QRDCSCSRCDCQQACSRKDYTEAHQYPC 375
Q C C C C + RKD A +Y C
Sbjct: 391 QDTCGCMMCKCIYSDQRKDIVLADKYTC 418
>02_01_0742 +
5524149-5524214,5524609-5524641,5524750-5524880,
5525174-5525282,5525406-5525522,5525896-5525961,
5526314-5526376,5526459-5526503,5526690-5526751,
5526974-5527067,5527375-5527467,5527561-5527630,
5527816-5527892,5527976-5528033,5528135-5528166,
5528245-5528376
Length = 415
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +2
Query: 404 QDFLKRVKENERLLKEAK----AAGK--TVNLKRQPAPPKAPTSSVELRNP 538
+D +++ E+L K A AAG+ T K APP+APT+ NP
Sbjct: 318 KDIPSHIRDEEKLSKLASLSQGAAGESSTAREKTPDAPPRAPTTGAPAVNP 368
>10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007
Length = 272
Score = 27.9 bits (59), Expect = 6.8
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Frame = +2
Query: 278 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKH--SKCRQD----FLKR----VK 427
T R NV +IV VRGRI+P I ++H + +C+++ L+R ++
Sbjct: 138 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLR 197
Query: 428 ENERLLKEAKAAGKTVNLKRQP--APPKAPTSSVELRNP 538
++ + + A VN P AP + P L NP
Sbjct: 198 QHPQQVLSAPGQPTAVNSSNAPCIAPIRRPICKSPLGNP 236
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 383 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 490
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999
Length = 764
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 274 KDRSRVQRDCSCSRCDCQQACSRKDYTEAHQY 369
K ++ CSCS+ D +CS D A Y
Sbjct: 270 KGHLSIEEPCSCSKDDTDSSCSLADEHHARHY 301
>09_01_0142 - 2103224-2103864,2104264-2104399
Length = 258
Score = 27.5 bits (58), Expect = 9.0
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Frame = +2
Query: 278 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKH--SKCRQDFLK-RVKENERLLK 448
T R NV +IV VRGRI+P I ++H + +C+++ +++ LL+
Sbjct: 124 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSMLLR 183
Query: 449 E-----AKAAGKTVNLKRQPAPPKAP 511
+ + A G+ + AP AP
Sbjct: 184 QHPQQVSPAPGRPTVVSSSNAPRIAP 209
>04_04_1657 -
35102751-35102868,35102987-35103504,35104065-35104211,
35104289-35106262,35106964-35107089,35107178-35107264,
35107335-35107424,35107725-35107811,35108248-35108300,
35109339-35109387
Length = 1082
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = -1
Query: 284 DLSFHGILCVHTL-LNCTIASDVYNVSNFVHFHVRGERNSSMCAEPASEQVPGAAAVTL- 111
D +FH +C HTL + T + ++ + V+ + N E++ G V +
Sbjct: 505 DYNFHKAVCGHTLTIGLTTSGHIFTAGSSVYGQLGNPNNDGRYPRLVEEKLGGGGVVEVA 564
Query: 110 -GVRHLRAL 87
G H+ L
Sbjct: 565 CGAYHVAVL 573
>04_04_0823 +
28383798-28383864,28384475-28384877,28387388-28387932,
28387978-28388594
Length = 543
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 244 KRVCTQSIPWKDRSRVQRDCSCS--RCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP 414
KR QS WK S++ C RCDC SR+D H+ C A Q +RLP
Sbjct: 127 KRYAVQS-DWKAHSKI---CGTREYRCDCGTLFSRRDSFITHRAFCDA--LAQESSRLP 179
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 27.5 bits (58), Expect = 9.0
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Frame = +2
Query: 278 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKH--SKCRQDFLK-RVKENERLLK 448
T R NV +IV VRGRI+P I ++H + +C+++ +++ LL+
Sbjct: 409 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGGTLLR 468
Query: 449 E-----AKAAGKTVNLKRQPAPPKAP 511
+ + A G++ + AP AP
Sbjct: 469 QHPQQVSPAPGRSTIVSSSNAPRIAP 494
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +3
Query: 348 LYRSASISVLSMSSTPSADKTSLRESKRM 434
+Y+SA++ V + SS P+ADK + + ++M
Sbjct: 410 VYKSANLQVSNSSSIPAADKQTRQTMRQM 438
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 446 KEAKAAGKTVNLKRQPAPPKAPTSSVELRNPSYLRL 553
K A +A K V +R+P+P + P S R P R+
Sbjct: 996 KGAPSAEKDVQQRREPSPRRKPASPPRKRTPPNRRI 1031
>01_06_1794 - 39919363-39920025
Length = 220
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 419 RVKENERLLKEAKAAGKTVNLKRQPAPP 502
R ++ ++ EA AAG + KRQP PP
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPP 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451,001
Number of Sequences: 37544
Number of extensions: 340853
Number of successful extensions: 1233
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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