Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31003
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 83 2e-16
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 30 1.7
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11) 29 2.3
SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1) 28 5.3
SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_40788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 83.0 bits (196), Expect = 2e-16
Identities = 37/55 (67%), Positives = 45/55 (81%)
Frame = +3
Query: 99 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMHTK 263
MTN+KGYRRGTR +F+++FR G LSTY+K YKVGDIVD++ NGAVQKGM K
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHK 477
Score = 72.1 bits (169), Expect = 3e-13
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = +2
Query: 245 KGYAHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRIN 367
KG HKVYHGKTGRVYNVT ALGV+VNK+V+G+I+ KRIN
Sbjct: 472 KGMPHKVYHGKTGRVYNVTKRALGVVVNKQVKGKILAKRIN 512
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 233 WCSSKGYAHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEH-VKHSKCRQD 409
W ++ AH+ + K ++ L + N R +RI ++H ++ K +QD
Sbjct: 3 WGRNRHPAHQSVYDKALTIFQEGTKHLEDLTNAIDR-----ERIQSCIDHKLEERKIKQD 57
Query: 410 FLKRVKENERLLKEAKAAGKT 472
F+ +KE RL +E+++ T
Sbjct: 58 FVTLIKERNRLGRESRSGAST 78
>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/61 (22%), Positives = 26/61 (42%)
Frame = +2
Query: 113 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQWCSSKGYAHKVYHGKTGRVY 292
G+ + G++R+ TWNYS + + S +W + R + Y + G +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNYSGMTLYHSGMTRNYPGMTW 146
Query: 293 N 295
N
Sbjct: 147 N 147
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 113 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 235
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/61 (22%), Positives = 26/61 (42%)
Frame = +2
Query: 113 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQWCSSKGYAHKVYHGKTGRVY 292
G+ + G++R+ TWNYS + + S +W + R + Y + G +
Sbjct: 87 GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNYSGMTLYHSGMTRNYPGMTW 146
Query: 293 N 295
N
Sbjct: 147 N 147
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 113 GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 235
G+ H G+ R+ TWNYS + + S +W + R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169
>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
Length = 3369
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 295 RDCSCSRCDCQQACSRKDYTEAHQYPC 375
+D +C CD Q C + T HQ PC
Sbjct: 2330 QDPNCGWCDSAQQCMPGNQTRPHQEPC 2356
>SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 482 KRQPAPPKAPTSSVELRNPSYLRLSHTNS 568
KR+ PPK TS LRNP+Y L NS
Sbjct: 576 KRENFPPKRKTSGA-LRNPAYRELMQGNS 603
>SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 83 NTRLEDDELQGLPPRHQGLVRSQVPHTWNYSALHVHESV--QSWRHC 217
NTR E+ EL L PR QGL + W L +H + S R+C
Sbjct: 472 NTRGEERELCLLLPRRQGLQQIPTLELWEKRNLKIHRNSLRSSARNC 518
>SB_12773| Best HMM Match : DUF1480 (HMM E-Value=2.1)
Length = 505
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 226 EAMVQFKRVCTQSIPWKDRSRVQRDCSCSRCDCQQA-CSRKDYTEAHQYPC*ACQ 387
E + +F++ C S+ +R CSR D + C D H+Y C +CQ
Sbjct: 155 ENLTEFRQ-CRNSVQGPSLIVDERGYLCSRKDLSASGCCHSDGETTHRYNCESCQ 208
>SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 467 KTVNLKRQPAPPKAPTSSVELRNPSYL 547
K++++++ P PPK P+++ R SY+
Sbjct: 430 KSMSMRKTPKPPKTPSTAKRARPSSYV 456
>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 27.5 bits (58), Expect = 9.2
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Frame = +2
Query: 239 SSKGYAHKVYHG--KTGRVYNVTAHALGVIVNKRV-RGRIIPKRINIRVEHVKHSKCRQD 409
++ G H V+ G + G V+N V + + IP+ I + H +QD
Sbjct: 400 NTDGNFHDVHDGSDENGIVFNTKKEEDKVEGQDIIDEDKTIPESHTIHL-HKPPRDDKQD 458
Query: 410 FLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAPTSSVELRNPSYLRLSH 559
+KEN K+ + A L PA + P S+ L S H
Sbjct: 459 LHGNIKENGEQEKDHEKAHDATELSHYPASARPPPSAQALNKTSEQEKEH 508
>SB_40788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 232 MVQFKRVCTQSIPWKDRSRVQRDCSCSR-CDCQQACSRKDYTEAHQY 369
M F V TQ W D + +CS CDCQ+ C + D ++Y
Sbjct: 114 MEHFADVLTQV--WLDNGLELLNQTCSNSCDCQERCLKIDELVCNKY 158
>SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/50 (22%), Positives = 19/50 (38%)
Frame = +1
Query: 226 EAMVQFKRVCTQSIPWKDRSRVQRDCSCSRCDCQQACSRKDYTEAHQYPC 375
++ V + + + S+ W R C C C + S+ T PC
Sbjct: 306 QSAVACRVIASDSVRWSVRGGPGHACQCGLCTANGSTSKGKVTRRQNSPC 355
>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 350 IPKRINIRVEHVKHSKCRQDFLKRVKENERLL----KEAKAAGKTVNLKRQPAPPKAPTS 517
I +++N + ++ + + KRV++N+RL ++AK K + R P PK S
Sbjct: 170 IERKLNNKAREMESIRFNIENPKRVRDNKRLAQGGHEKAKVVNKRTDGPRLPELPKRKLS 229
Query: 518 SVEL 529
+L
Sbjct: 230 GADL 233
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 378 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 512
++S+ PS KT+ ++R RKP +PAR ST ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677
>SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 232 MVQFKRVCTQSIPWKDRSRVQRDCSCSR-CDCQQACSRKDYTEAHQY 369
M F V TQ W D + +CS CDCQ+ C + D ++Y
Sbjct: 563 MEHFADVLTQV--WLDNGLELLNQTCSNSCDCQERCLKIDELVCNKY 607
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,942,204
Number of Sequences: 59808
Number of extensions: 395216
Number of successful extensions: 1345
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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