Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31003
         (617 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           29   0.12 
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   3.4  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          24   4.5  
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    23   6.0  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   6.0  

>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 29.1 bits (62), Expect = 0.12
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 401  RQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAPTSSVE 526
            R++  +R +E  +L  EA  A +  N + QP PP  P +  E
Sbjct: 1101 REEDERRTEERRQLHNEANRAYRQRNRRSQPTPPAPPPTPRE 1142


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +2

Query: 377  EHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAPTSSVELRNPSYLRL 553
            E V   + R+  ++R + + R      A  +   L+R   PP  P S       + LRL
Sbjct: 1028 EEVADLEARRAEIRRARNDRRNASRRAARARQRELQRAGRPPSPPPSPRTAARRADLRL 1086


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 386 KHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKR 487
           KH  C  +     +E +++ KEA    +T+NL +
Sbjct: 323 KHRLCELNREPTEREEQQMQKEAAVMARTMNLNQ 356


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 250 VCTQSIPWKDRSRVQRDCSCSRCDCQQACSRK 345
           VC  +  W   S  +R    S+C C  A +R+
Sbjct: 412 VCAGNWMWVSSSAFERLLDSSKCTCPIALARR 443


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 241 TAPLPLMSTMSPTLYTFMYVE 179
           TA +P  S + PTL+  MY E
Sbjct: 607 TAGVPQGSVLGPTLWNLMYNE 627


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,392
Number of Sequences: 2352
Number of extensions: 13121
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60553008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)