Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31003
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
 Frame = -1

Query: 293 CTRDLSFHGILCVHTLLN-------CTIASDVYNVSNFVHFHVRGERNSSMCAEPASEQV 135
           C +   ++ +L +H + +       CT+  + +     +  H++   +SS+   P    +
Sbjct: 237 CGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 413 LKRVKENERLLKEAKAAGKTVNLKRQPAPPKAPTSSVELRNP 538
           LKR       +   +A+ ++ N    PA   A T+++  R+P
Sbjct: 721 LKRTDIIHNYIMRGEASPRSPNASPSPAEQCASTTTITARSP 762



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 496 SP*SSHIVSGTEKP 537
           SP  S I SGTEKP
Sbjct: 576 SPSDSGIESGTEKP 589


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 449 EAKAAGKTVNLKRQPAPPKAPTSSVELRNPSYLRLSHTNS*RKVQ 583
           +A   G   N  + P PP  P  +   +NPS + +S  +   ++Q
Sbjct: 32  QAPQRGSPPNPSQGP-PPGGPPGAPPSQNPSQMMISPASGIHQMQ 75


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 224 DVYNVSNFVHFHVRGERNSSMCAEPASEQVPGAAAVT 114
           ++YN S+ +  ++RGE  S+       + VP    +T
Sbjct: 376 NIYNASSRMENNLRGETQSNYREMEKRQSVPANDLLT 412


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 440 LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRNPSYLRLSHT 562
           L+++    G   N+K Q  P      S  LR+P +  +  T
Sbjct: 383 LVRKVLGFGYESNVKYQVVPSALQMWSTSLRDPVFFSIYKT 423


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 440 LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRNPSYLRLSHT 562
           L+++    G   N+K Q  P      S  LR+P +  +  T
Sbjct: 383 LVRKVLGFGYESNVKYQVVPSALQMWSTSLRDPVFFSIYKT 423


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 209 RHCRHQRQWCSSKGYAHKVYHGKTGRVYNVT 301
           ++ R Q +    +GY H V  G   R++  T
Sbjct: 687 QYIREQTESDDKEGYLHSVVSGALDRLHYET 717


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 440 LLKEAKAAGKTVNLKRQPAPPKAPTSSVELRNPSYLRLSHT 562
           L+++    G   N+K Q  P      S  LR+P +  +  T
Sbjct: 9   LVRKVLGFGYESNVKYQVVPSALQMWSTSLRDPVFFSIYKT 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,164
Number of Sequences: 438
Number of extensions: 3155
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)