Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31003
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 108 3e-24
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 108 3e-24
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 107 4e-24
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 107 4e-24
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 2.5
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein... 29 3.3
At1g80630.1 68414.m09462 leucine-rich repeat family protein 29 3.3
At4g33560.1 68417.m04769 expressed protein 28 4.3
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 4.3
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 7.5
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 7.5
At3g45880.1 68416.m04965 hypothetical protein 27 7.5
At5g62800.1 68418.m07883 seven in absentia (SINA) family protein... 27 10.0
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 10.0
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 27 10.0
At3g07570.1 68416.m00907 membrane protein, putative similar to m... 27 10.0
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 108 bits (260), Expect = 3e-24
Identities = 48/87 (55%), Positives = 66/87 (75%)
Frame = +2
Query: 245 KGYAHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRV 424
KG HK YHG+TGR++NVT A+GV VNK++ RII KRI++RVEHV+ S+C ++F R
Sbjct: 50 KGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRK 109
Query: 425 KENERLLKEAKAAGKTVNLKRQPAPPK 505
K+N+ L +AKA G+T++ KRQP PK
Sbjct: 110 KQNDVLKADAKARGETISTKRQPKGPK 136
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/56 (57%), Positives = 39/56 (69%)
Frame = +3
Query: 99 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMHTKY 266
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGM K+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKF 56
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 108 bits (260), Expect = 3e-24
Identities = 48/87 (55%), Positives = 66/87 (75%)
Frame = +2
Query: 245 KGYAHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRV 424
KG HK YHG+TGR++NVT A+GV VNK++ RII KRI++RVEHV+ S+C ++F R
Sbjct: 50 KGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRK 109
Query: 425 KENERLLKEAKAAGKTVNLKRQPAPPK 505
K+N+ L +AKA G+T++ KRQP PK
Sbjct: 110 KQNDVLKADAKARGETISTKRQPKGPK 136
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/56 (57%), Positives = 39/56 (69%)
Frame = +3
Query: 99 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMHTKY 266
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGM K+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKF 56
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 107 bits (258), Expect = 4e-24
Identities = 48/87 (55%), Positives = 65/87 (74%)
Frame = +2
Query: 245 KGYAHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRV 424
KG HK YHG+TGR++NVT A+GV VNK++ RII KRI++RVEHV+ S+C ++F R
Sbjct: 50 KGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRK 109
Query: 425 KENERLLKEAKAAGKTVNLKRQPAPPK 505
K+N+ L AKA G+T++ KRQP PK
Sbjct: 110 KKNDELKAAAKANGETISTKRQPKGPK 136
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/56 (57%), Positives = 39/56 (69%)
Frame = +3
Query: 99 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMHTKY 266
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGM K+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKF 56
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 107 bits (258), Expect = 4e-24
Identities = 48/87 (55%), Positives = 65/87 (74%)
Frame = +2
Query: 245 KGYAHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRV 424
KG HK YHG+TGR++NVT A+GV VNK++ RII KRI++RVEHV+ S+C ++F R
Sbjct: 50 KGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRK 109
Query: 425 KENERLLKEAKAAGKTVNLKRQPAPPK 505
K+N+ L AKA G+T++ KRQP PK
Sbjct: 110 KKNDELKAAAKANGETISTKRQPKGPK 136
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/56 (57%), Positives = 39/56 (69%)
Frame = +3
Query: 99 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMHTKY 266
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGM K+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKF 56
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 224 DVYNVSNFVHFHVRGERNSSM 162
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family
Length = 604
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 427 FDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVV 290
FDS ++L AL VL +N DI S +V+ M+ H V
Sbjct: 482 FDSKPKILQALSVLYRINNDIVTYEREMSKGEVVNGVNSYMNQHGV 527
>At1g80630.1 68414.m09462 leucine-rich repeat family protein
Length = 578
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 56 PLSRSVKLCNTRLEDDELQGLPPRHQGLVRSQVPHTWNYSALHVHESVQS 205
P S++ C T ++D+ L + + +GL+ + N S+ V E VQS
Sbjct: 447 PKLESLRACGTWIDDEALDMISKKCRGLLHLDLQGCLNVSSRGVKEVVQS 496
>At4g33560.1 68417.m04769 expressed protein
Length = 95
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 437 RLL-KEAKAAGKTVNLKRQPAPPKAPTSSVELRN 535
RLL KEA A +T+ + +P+PP + +S+ +R+
Sbjct: 34 RLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +2
Query: 359 RINIRVEHVKHSKCRQDFLKRVKENERL 442
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 158 HTWNYSALHVHESVQSWRHCRHQRQWCS 241
+T NY + E +WR RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 365 NIRVEHVKHSKCRQDFLKRVKENE-RLLKEAKAAGKTVN 478
N+ ++ + CRQ F+K + E + R ++E KA +T +
Sbjct: 628 NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTH 666
>At3g45880.1 68416.m04965 hypothetical protein
Length = 431
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -2
Query: 493 WLSLQVDGLAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTL 329
W +Q D FLQ L SL VLS D ++D + ++ PSA L
Sbjct: 299 WYDMQFDIKYAYFNFLQSLLYKSSSLNPVLSWREDEDSESSDAEGSKFTPSATNL 353
>At5g62800.1 68418.m07883 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 348
Score = 27.1 bits (57), Expect = 10.0
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +1
Query: 253 CTQSIPWKDRSRVQRDCSCSRCDC 324
CT+S+ ++ S +++C+ S+C C
Sbjct: 110 CTKSVSYEKVSSHEKECNYSQCSC 133
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.1 bits (57), Expect = 10.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 203 SWRHCRHQRQWCSS 244
+WR RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Frame = +1
Query: 307 CSRCD----CQQACSRKDYTEAHQYPC 375
CSRC C C R D++ HQ C
Sbjct: 72 CSRCKSVRYCSAECQRSDWSSGHQRNC 98
>At3g07570.1 68416.m00907 membrane protein, putative similar to
membrane protein SDR2 (GI:1747306) [Mus musculus]
Length = 369
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 218 RHQRQWCSSKGYAHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPK 358
RH +QW + YAH + TG + +T G+++ R++ + K
Sbjct: 233 RHMKQWDPTWFYAH-IALQTTGFLLGLTGVICGLVLENRLKANNVSK 278
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,921,294
Number of Sequences: 28952
Number of extensions: 263133
Number of successful extensions: 931
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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