Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31001
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 115 3e-26
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 104 5e-23
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 103 7e-23
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 88 4e-18
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 38 0.007
03_01_0404 + 3138624-3140096 31 0.58
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 29 2.3
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154... 29 2.3
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 5.4
03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084 28 5.4
03_01_0646 + 4742398-4742994,4743681-4744085 27 7.1
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 115 bits (276), Expect = 3e-26
Identities = 46/72 (63%), Positives = 67/72 (93%)
Frame = +2
Query: 41 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 220
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 221 IITIMSNPRQYR 256
++T+++NPRQ++
Sbjct: 63 LMTVVANPRQFK 74
Score = 103 bits (248), Expect = 7e-23
Identities = 43/57 (75%), Positives = 51/57 (89%)
Frame = +1
Query: 256 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 426
+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 75 VPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 131
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 104 bits (249), Expect = 5e-23
Identities = 50/94 (53%), Positives = 71/94 (75%), Gaps = 16/94 (17%)
Frame = +2
Query: 23 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 187
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 188 -----------AGECTEEEVEKIITIMSNPRQYR 256
AGE T EE+E+++T+++NPRQ++
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFK 94
Score = 103 bits (248), Expect = 7e-23
Identities = 43/57 (75%), Positives = 51/57 (89%)
Frame = +1
Query: 256 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 426
+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 95 VPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 151
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 103 bits (248), Expect = 7e-23
Identities = 43/57 (75%), Positives = 51/57 (89%)
Frame = +1
Query: 256 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 426
+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 97 VPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 153
Score = 102 bits (245), Expect = 2e-22
Identities = 50/96 (52%), Positives = 71/96 (73%), Gaps = 18/96 (18%)
Frame = +2
Query: 23 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 187
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 188 -------------AGECTEEEVEKIITIMSNPRQYR 256
AGE T EE+E+++T+++NPRQ++
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFK 96
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 88.2 bits (209), Expect = 4e-18
Identities = 39/55 (70%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Frame = +1
Query: 265 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 426
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 61
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +1
Query: 343 REDLERLKKIRAHRGMRHYWGLRVRGQ 423
R +ERLK+IR +RG+RH GL VRGQ
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQ 134
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 295 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 393
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 356 RGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVY 466
RG + L C+++ F+C +STL + ELL++
Sbjct: 184 RGQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220
>01_07_0179 -
41814886-41815074,41815172-41815222,41815365-41815469,
41815852-41815945,41816056-41816150,41816581-41816700,
41816737-41816832,41817272-41817569,41817777-41817853,
41818932-41819447
Length = 546
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 353 WRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELL 460
W+ FA+ G D+ F+ + T LLA EE LL
Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWLL 247
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 168 SAFLRTMLEYLRPTPLIAVIANIT 97
S+FL TM EY+R P A +AN T
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKT 278
>03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084
Length = 156
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 258 YLYCLGFDMIVIIFSTSSSVHSPARLS 178
Y YCLG +I ++++T+ RLS
Sbjct: 46 YTYCLGISIIAVLYTTAQVTRDVHRLS 72
>03_01_0646 + 4742398-4742994,4743681-4744085
Length = 333
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 106 CDDGYQRCWPEVLQHCSQKSR 168
CDD Y+R W +L+ ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,994,811
Number of Sequences: 37544
Number of extensions: 266165
Number of successful extensions: 741
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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