Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31001
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)              140   9e-34
SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)                       28   4.1  
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)                 28   5.4  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    28   5.4  
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               27   7.2  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  

>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score =  140 bits (338), Expect = 9e-34
 Identities = 61/78 (78%), Positives = 75/78 (96%)
 Frame = +2

Query: 23  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 202
           MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IKGVGRRY+NIV KKADID++KRAGE T
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIKGVGRRYANIVCKKADIDMNKRAGELT 60

Query: 203 EEEVEKIITIMSNPRQYR 256
           E+EVE+++TIM NPRQY+
Sbjct: 61  EDEVERVVTIMQNPRQYK 78



 Score =  111 bits (266), Expect = 5e-25
 Identities = 47/57 (82%), Positives = 53/57 (92%)
 Frame = +1

Query: 256 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 426
           IPDWFLNRQKD  DGKYSQ+ ++ LD+K+REDLERLKKIRAHRG+RHYWGLRVRGQH
Sbjct: 79  IPDWFLNRQKDHKDGKYSQILANGLDNKMREDLERLKKIRAHRGLRHYWGLRVRGQH 135


>SB_49538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/34 (82%), Positives = 34/34 (100%)
 Frame = +2

Query: 23  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIK 124
           MSLVIP+KFQHILR++NTNIDGK+K+MFAMT+IK
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGKQKIMFAMTSIK 34


>SB_30426| Best HMM Match : CXC (HMM E-Value=2.8)
          Length = 410

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 196 FASTLVKINVGFFENNVGVPPANTFDSRHRKHNLSFAIDVRIHDTKNMLKFVW----NDQ 29
           + +T+ + +    E  VG+   N F +R+R H  SF    +  ++  + K++W    ND 
Sbjct: 313 YQATVTRKDKNTSETYVGLTE-NAFKTRYRNHTASFR-HAKHRNSTELSKYIWSLKDNDI 370

Query: 28  RHF 20
            HF
Sbjct: 371 EHF 373


>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
          Length = 1104

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -3

Query: 213 TSSSVHSPARLSRSMSAFLRTMLEYLRPTPLIAVIAN 103
           T +++HS  + ++++  F+ + +E  RPT L  ++ N
Sbjct: 826 TDTALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGN 862


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 259 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 381
           PD  LN  KD  +GK    T+  + ++L  D ++ K  R+H
Sbjct: 663 PDPSLNVNKDSEEGKTQAQTTDEIIAQLISDHKKKKNARSH 703


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +2

Query: 44  KFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKI 223
           +F+H ++     +  KRK +     +       +NI   K DIDL    G CTE+E+ ++
Sbjct: 59  EFRHEVQASTRKVSSKRKPIRKRRTVT------ANISATKYDIDL---LGYCTEQEIRRV 109

Query: 224 I 226
           +
Sbjct: 110 V 110


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 271 LNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 366
           L R+K + + KY +   +N D K RE++E LK
Sbjct: 873 LRREKKVFE-KYQKAARANPDKKEREEIESLK 903


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 292  VDGKYSQLTSSNLD-SKLREDLERLKKIRAHRGMR 393
            V+ KY +  S + + + LRE+LE +KK+R   G++
Sbjct: 2765 VENKYKEKASDSANVAVLREELEDIKKLRQDMGIQ 2799


>SB_3781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +1

Query: 310 QLTSS--NLDSKLREDLERLKKI 372
           QLTS   N+D K+RE LE++KK+
Sbjct: 72  QLTSEEDNVDPKIREGLEKIKKL 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,782,686
Number of Sequences: 59808
Number of extensions: 302254
Number of successful extensions: 872
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)