Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31001
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   120   6e-28
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    31   0.68 
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    28   4.8  
Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical p...    27   6.3  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  120 bits (289), Expect = 6e-28
 Identities = 52/78 (66%), Positives = 68/78 (87%)
 Frame = +2

Query: 23  MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 202
           MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ +  +KAD+D++KRAGE T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 203 EEEVEKIITIMSNPRQYR 256
           EE+ +KI+TIM NP QY+
Sbjct: 61  EEDFDKIVTIMQNPSQYK 78



 Score =  104 bits (250), Expect = 3e-23
 Identities = 45/57 (78%), Positives = 51/57 (89%)
 Frame = +1

Query: 256 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 426
           IP+WFLNRQKDI DGK  QL S+ +D+KLREDLER+KKIR HRG+RHYWGLRVRGQH
Sbjct: 79  IPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLHRGLRHYWGLRVRGQH 135


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 344 VKIWRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVYQRRS 478
           +K +R   + AL     +TGA + + +TL LLA    LL  QR S
Sbjct: 137 IKKYRWGMKMALLFHLCVTGALLSITNTLHLLASGYHLLKRQRNS 181


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = -3

Query: 294 NNILLPI*EPVWYLYCLGFDMIVII------FSTSSSVHSPARLSRSMSAFLRT---MLE 142
           NN L+      W+  C GF+ ++I+       S   S+ S A     +S  L T    L 
Sbjct: 199 NNFLVMFNTFFWFSICFGFNSVLIVKLIKFKLSVPPSMRSQASHRAEISLTLTTASMSLS 258

Query: 141 YLRPTPLIAVIANITFRLPSMFVFMIR 61
           YL    LI V+  I + L ++F+ ++R
Sbjct: 259 YL-TNGLITVVGRIFYDL-TLFLIVLR 283


>Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical
           protein C08F11.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 294 NNILLPI*EPVWYLYCLGFDMIVII 220
           NN LL      W+  CLGF++++I+
Sbjct: 199 NNFLLMFNTFFWFSICLGFNLVLIV 223


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 106  CDDGYQRCWPEVLQHCS 156
            C + YQ CWP +L  CS
Sbjct: 1512 CREYYQICWPPILLACS 1528


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,078,098
Number of Sequences: 27780
Number of extensions: 231910
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)