Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31000
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    67   2e-12
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   1.6  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    26   2.8  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.7  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   8.5  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   8.5  

>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 30/74 (40%), Positives = 43/74 (58%)
 Frame = +3

Query: 9   PMLIMRSAIINAGYKVSYSHASKMSVKTNAPPQLMWDIIRTWEKTHPIKQSKLVSDPVTK 188
           P  I  SA++NAGY+VS SHA   ++KTNAP   +WD++R+W K HP+K   +       
Sbjct: 432 PQNIFVSALLNAGYRVSGSHAKSNAIKTNAPWSFVWDVLRSWIKDHPVKLENISKTSAGA 491

Query: 189 HILSQDIKNNVDLS 230
            IL +     VD +
Sbjct: 492 AILEKTPTAEVDFT 505



 Score = 29.9 bits (64), Expect = 0.23
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 242 SQSTGRRDGRLRFQINPAPFWGPGSR 319
           S+   +++G  R+Q+NP   WGP S+
Sbjct: 510 SEFASKKEGYTRYQMNPTENWGPKSK 535


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 84  VKTNAPPQLMWDIIRTWEKTHPIKQSKLVSDP 179
           VK NAP  L   I   W+K   +++  L  DP
Sbjct: 55  VKDNAPENLQTIIAVLWDKLEDLQKETLFDDP 86


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 57  SYSHASKMSVKTNAPPQLMWDIIRTWEKTHPIKQSKLVSDP 179
           S S ++K+ VK +  P+ +  ++ TW     I   KL +DP
Sbjct: 198 SGSGSNKLEVKMHPVPKFLRFLVDTWAPEASIISFKLETDP 238


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 279 KRSLPSRRPVDWLAHSPTNRHYSLYPEIVCASLQDLKPACS 157
           KRSL    P     H P +R +SL    +  S    KP  S
Sbjct: 142 KRSLTVPTPRTSFPHHPRSRRFSLKNAAIATSYHKFKPLSS 182


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 168 VSDPVTKHILSQDIKNNVDLSVNELANPLAAVTAGFA 278
           +S PV K  +S  +K N D     +  PL+ +  GF+
Sbjct: 785 ISIPVGKDSMSMSMKWNEDGREKSVTAPLSLIITGFS 821


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +3

Query: 141 THPIKQSKLVSDPVTK-HI--LSQDIKNN 218
           T P+K  +  SDP T+ H+  L+QD+K+N
Sbjct: 207 TSPLKLFQGASDPFTREHLNQLTQDVKSN 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,779
Number of Sequences: 5004
Number of extensions: 35065
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)