Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31000
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0220 + 32452831-32452944,32453618-32453911,32454416-324545...    67   7e-12
10_06_0078 + 10416950-10417174,10417595-10417679,10417782-104179...    58   4e-09
08_02_0682 + 20018879-20019226,20019324-20019656                       29   1.6  
03_02_0300 - 7246312-7246662,7246757-7246831,7246920-7246993,724...    29   2.8  
05_03_0233 - 10704018-10704118,10704217-10705411                       28   3.7  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    28   4.9  
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253...    27   6.5  
03_02_0697 - 10487661-10488342,10490474-10490556                       27   6.5  
01_07_0224 - 42121011-42122486                                         27   6.5  

>03_06_0220 +
           32452831-32452944,32453618-32453911,32454416-32454503,
           32454596-32454717,32454985-32455142,32455201-32455273,
           32455552-32455640,32455753-32455858,32455967-32456179,
           32456726-32456920,32457051-32457128,32457209-32457523
          Length = 614

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
 Frame = +3

Query: 15  LIMRSAIINAGYKVSYSHASKMSVKTNAPPQLMWDIIRTWEKTHPIKQSKLVSDPVTKHI 194
           ++ RSA++NAGY++S +H + + +KT+AP  ++WDI+R W K HP+K+     D V   I
Sbjct: 445 VLFRSAVLNAGYRISSTHVNPLGLKTDAPWDVIWDIMRCWVKNHPVKEQP--HDSVGTAI 502

Query: 195 LSQDIKNNVDLSVNELANPLAAVTAGFASRSILHRSGDLGPEPQS-ISATTKCRSLL 362
           LS+  K  ++ + +  A  L+   A    R + +     GP+ ++    T+K  SLL
Sbjct: 503 LSKSPK--LEANFSRAAAALSRAQAKKVKRFLPNPERHWGPKIRAGRKITSKHASLL 557


>10_06_0078 +
           10416950-10417174,10417595-10417679,10417782-10417900,
           10418200-10418287,10419400-10419452,10419876-10420015,
           10420094-10420166,10420243-10420311,10420632-10420844,
           10422304-10422498,10422581-10422658,10423456-10423590
          Length = 490

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 29/63 (46%), Positives = 44/63 (69%)
 Frame = +3

Query: 24  RSAIINAGYKVSYSHASKMSVKTNAPPQLMWDIIRTWEKTHPIKQSKLVSDPVTKHILSQ 203
           +SAI NAGY++S SH   +++KT+AP  ++WDI+R W K H +K  +  + P T+ ILSQ
Sbjct: 384 QSAIRNAGYQISGSHVDPLALKTDAPMSVIWDIMRCWVKIHAVKY-RPGNHPGTR-ILSQ 441

Query: 204 DIK 212
           + K
Sbjct: 442 EPK 444


>08_02_0682 + 20018879-20019226,20019324-20019656
          Length = 226

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 322 GSGPRSPERCRIDLEAKPAVTAASGLASS 236
           G+   S +RCR+ LE  PA+  AS LA S
Sbjct: 78  GASLLSDDRCRVSLEYAPAIVLASLLARS 106


>03_02_0300 -
           7246312-7246662,7246757-7246831,7246920-7246993,
           7247247-7247334,7247464-7247615,7247702-7247861,
           7247940-7248095,7248181-7248396,7248808-7249065,
           7249816-7250019,7251334-7251423
          Length = 607

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +3

Query: 243 ANPLAAVTAGFASRSILHR-----SGDLGPEPQSISATTKCRSLLKIRTRTGRKKTMLKE 407
           + P    T+ F  R+  H      +G + P P+ +SA +    LL  R+ +GR     KE
Sbjct: 510 SKPSPKKTSSFNRRTSSHHPNGNGAGFMTPVPRRVSAGSATPELLTPRSYSGRYNNYFKE 569

Query: 408 NIRI 419
           N R+
Sbjct: 570 NRRL 573


>05_03_0233 - 10704018-10704118,10704217-10705411
          Length = 431

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +3

Query: 174 DPVTKH---ILSQDIKNNVDLSVNELANPLAAVTAGFASRSILHRSGDLGPEPQSISATT 344
           DP+ +H   ++SQD   N+DL   ++ N  A   AG    S    +  + P P  +S   
Sbjct: 338 DPLNEHSVYVISQDCLFNIDLKTKQILNCTAQTNAGREVGSSPPIACVVPPLPHLVSPYP 397

Query: 345 KC 350
            C
Sbjct: 398 SC 399


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 245  QSTGRRDGRLRFQINPA 295
            Q +GRRD  ++FQ+NPA
Sbjct: 4837 QPSGRRDNSVQFQVNPA 4853


>11_06_0442 -
           23622633-23623000,23623149-23623721,23624795-23625335,
           23625807-23625982,23626081-23626804
          Length = 793

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 315 PEPQSISATTKCRSLLKIRTRTGRKKTMLKENIR 416
           P    +  T  C +++  + RTGRKK ++ ++IR
Sbjct: 424 PITSIVIVTLACVAIILQKNRTGRKKIIINDSIR 457


>03_02_0697 - 10487661-10488342,10490474-10490556
          Length = 254

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 216 NVDLSVNELANPLAAVTAGFASRSILHRSGDLGPEPQS 329
           N DL+V  L+   A  TA  +S +  H S    P P S
Sbjct: 192 NTDLTVTRLSASAAKTTAAISSSNSNHASSSAPPPPPS 229


>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +2

Query: 5   NADVDNEISNY*RWL*SILFARIENVSEDERSTTIDVGHHQDVGENTPNQAEQAGFRSCN 184
           NA V+  I  Y R   +++ +R+E V         + GH  DV  + P     AG  + N
Sbjct: 136 NATVEERIRPYTRKWEALIMSRVEEVRLRMAPPEEEPGHRCDVRHDAPLLVMTAGGYTGN 195

Query: 185 EAHTIS 202
             H  S
Sbjct: 196 LFHAFS 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,566,694
Number of Sequences: 37544
Number of extensions: 250262
Number of successful extensions: 797
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)