Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV31000
(505 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 1e-10
SB_57579| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 2e-10
SB_47091| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.058
SB_59237| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_19103| Best HMM Match : Filamin (HMM E-Value=0.0064) 30 1.2
SB_1951| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_38454| Best HMM Match : DCX (HMM E-Value=4.2) 27 6.6
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07) 27 6.6
>SB_34063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 63.3 bits (147), Expect = 1e-10
Identities = 31/76 (40%), Positives = 47/76 (61%)
Frame = +3
Query: 24 RSAIINAGYKVSYSHASKMSVKTNAPPQLMWDIIRTWEKTHPIKQSKLVSDPVTKHILSQ 203
RSA++ GYKVS SH +VKT+AP ++WD++R WEK +P+K+ + P + ILS+
Sbjct: 500 RSALLRLGYKVSGSHVCPTAVKTDAPNNVLWDVMRCWEKINPVKK-RAKGSPASA-ILSK 557
Query: 204 DIKNNVDLSVNELANP 251
D + + ANP
Sbjct: 558 DPQIQASFEMYPGANP 573
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 257 RRDGRLRFQINPAPFWGPGSRA 322
R+ LRFQ NP WGP +RA
Sbjct: 576 RQQKLLRFQENPEANWGPKARA 597
>SB_57579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 62.5 bits (145), Expect = 2e-10
Identities = 31/76 (40%), Positives = 47/76 (61%)
Frame = +3
Query: 24 RSAIINAGYKVSYSHASKMSVKTNAPPQLMWDIIRTWEKTHPIKQSKLVSDPVTKHILSQ 203
RSA++ GYKVS SH +VKT+AP ++WD++R WEK +P+K+ + P + ILS+
Sbjct: 37 RSALLRLGYKVSGSHVCPTAVKTDAPNNVLWDVMRCWEKINPVKK-RPEGSPASA-ILSK 94
Query: 204 DIKNNVDLSVNELANP 251
D + + ANP
Sbjct: 95 DPQIQASFEMYPGANP 110
>SB_47091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 34.3 bits (75), Expect = 0.058
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 24 RSAIINAGYKVSYSHASKMSVKTNAP 101
RSA++ GYKVS SH +VKT+AP
Sbjct: 37 RSALLRLGYKVSGSHVCPTAVKTDAP 62
>SB_59237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 31.5 bits (68), Expect = 0.41
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 30 AIINAGYKVSYS--HASKMSVKTNAPPQLMWDIIRTWEKTHPIKQSKLVSDPV-TKHILS 200
++IN SY H +++ KT+ P + DI+ ++++ HP + S S PV K ILS
Sbjct: 61 SVINKDILSSYQQRHPFQLTTKTSFPV-INKDILSSYQQRHPFQLSTKTSFPVINKDILS 119
Query: 201 QD 206
D
Sbjct: 120 SD 121
>SB_19103| Best HMM Match : Filamin (HMM E-Value=0.0064)
Length = 617
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 282 WKRSL-PSRRPVDWLAHSPTNRHYSLYPEIVCASLQDLKP 166
WK+ L P R + W + P+N S PE+ +L D++P
Sbjct: 380 WKQVLRPCRENLTWRENVPSNNPLSTDPELSYITLWDIRP 419
>SB_1951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +3
Query: 33 IINAGYKVSYS--HASKMSVKTNAPPQLMWDIIRTWEKTHPIKQSKLVSDPV-TKHILS 200
+IN SY H ++S KT+ P + DI+ ++++ HP + S S PV K ILS
Sbjct: 121 VINKDILSSYQQRHPFQLSTKTSFPV-INKDILSSYQQRHPFQLSTKTSFPVINKDILS 178
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +3
Query: 33 IINAGYKVSYS--HASKMSVKTNAPPQLMWDIIRTWEKTHPIKQSKLVSDPV-TKHILS 200
+IN SY H ++S KT+ P + DI+ ++++ HP + S S PV K ILS
Sbjct: 146 VINKDILSSYQQRHPFQLSTKTSFPV-INKDILSSYQQRHPFQLSTKTSFPVINKDILS 203
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 33 IINAGYKVSYS--HASKMSVKTNAPPQLMWDIIRTWEKTHPIKQSKLVSDPV 182
+IN SY H ++S KT+ P + DI+ ++++ HP + S S PV
Sbjct: 171 VINKDILSSYQQRHPFQLSTKTSFPV-INKDILSSYQQRHPFQLSTKTSFPV 221
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 33 IINAGYKVSYS--HASKMSVKTNAPPQLMWDIIRTWEKTHPIKQSKLVSDPV-TKHILS 200
+IN SY H ++ KT+ P + DI+ ++++ HP + S S PV K ILS
Sbjct: 96 VINKDILSSYQQRHPFQLLTKTSFPV-INKDILSSYQQRHPFQLSTKTSFPVINKDILS 153
>SB_38454| Best HMM Match : DCX (HMM E-Value=4.2)
Length = 239
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 279 SRSILHRSGDLGPEPQSISATTKCRSLLKIRTRTGRKK 392
+R I GDLGP P + LL+IR + RK+
Sbjct: 161 AREIQENKGDLGPVPTYPFSFENATFLLRIRVSSTRKR 198
>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
Length = 2008
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 216 NVDLSVNELANPLAAVTAGFASRSILHRSGDLGPEPQSISATTKCRSL 359
N++++V A+P AAV++ A+ S L SGD S++ T +L
Sbjct: 1242 NLNITVTAPADPSAAVSSVLAAASTLSDSGDPTQAVSSLAMLTGSSAL 1289
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,877
Number of Sequences: 59808
Number of extensions: 284031
Number of successful extensions: 778
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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