Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV31000
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.19 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.19 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 421 CIRMFSFNIVFFLPVLVLIF 362
           C+ +F+FNI+ F+PV  L +
Sbjct: 503 CVGVFTFNIIKFVPVKYLTY 522


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 421 CIRMFSFNIVFFLPVLVLIF 362
           C+ +F+FNI+ F+PV  L +
Sbjct: 556 CVGVFTFNIIKFVPVKYLTY 575


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 27  SAIINAGYKVSYSHASKMSVKTNAPPQLMWDIIRTWEKTH 146
           SA+   GYK+ Y HA     + +   +++ D   T EK++
Sbjct: 245 SALQTDGYKILYFHAMSSIAEFSVSTEVLQD--HTLEKSN 282


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 288 ILHRSGDLGPEPQSISA 338
           + HR  DLG E ++I+A
Sbjct: 583 VAHREEDLGSESKTINA 599


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 288 ILHRSGDLGPEPQSISA 338
           + HR  DLG E ++I+A
Sbjct: 551 VAHREEDLGSESKTINA 567


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,197
Number of Sequences: 438
Number of extensions: 2616
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)