Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30999x
         (484 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    26   0.16 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   4.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.9  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 317 LLDVPPFDRHRSRIGAAADWLLGGKCHQQSRCPLGLHPRS 436
           LL+    D HR +     +W+ GGK       P+ +HP S
Sbjct: 77  LLEFVQIDPHRWKY-VNGEWVPGGKAEVPPSNPIYIHPES 115


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 16/55 (29%), Positives = 20/55 (36%)
 Frame = -1

Query: 373 IGSSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGTGRPLVNLDQCGVPQRRFNY 209
           IGS +   P   +G++ E     C         GGT   LVN   C  P     Y
Sbjct: 203 IGSYSCKCPKGFQGQNCELNVDDCKPNPC--QNGGTCHDLVNSFSCSCPSGTLGY 255



 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/48 (22%), Positives = 17/48 (35%)
 Frame = +2

Query: 269 ASPIVHNAAQVTEASHLLDVPPFDRHRSRIGAAADWLLGGKCHQQSRC 412
           +SP ++ A      +H     P+       G   DW     C  Q+ C
Sbjct: 67  SSPCLNGATCQDHTTHYTCHCPYGYTGKDCGEYVDWCSTNPCENQATC 114


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 467 VTCKCRQGLP 438
           VTCKC  G P
Sbjct: 874 VTCKCENGKP 883


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 387 PPSNQSAAAPI 355
           PP+ QSAA PI
Sbjct: 12  PPAPQSAATPI 22


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,029
Number of Sequences: 336
Number of extensions: 2493
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)