Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30999x
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0951 + 29614196-29615275                                         27   6.0  
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139...    27   6.0  
02_05_0461 - 29242711-29242864,29242992-29243059,29243500-292435...    27   6.0  
07_03_0109 + 13502604-13503059,13503729-13504682                       27   7.9  
01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255     27   7.9  
01_05_0035 + 17440828-17441364                                         27   7.9  

>04_04_0951 + 29614196-29615275
          Length = 359

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 246 KLTNGLPVPPLSSTMLPK*QKLPTCSMCLPLIDIGAESVLLP 371
           +L   LP+  ++S++    +  P C++CL    + AE  LLP
Sbjct: 104 RLIESLPLFTMASSLAALPKSSPDCAVCLSPFTLDAELRLLP 145


>04_04_0909 -
           29312875-29313135,29313235-29313556,29313676-29313923,
           29314032-29314259
          Length = 352

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 379 QPIGSSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGTGRPLVNLDQCGVPQRR 218
           +P+ S   +    +   HI  VG    L + VD   G G P+++L Q   P RR
Sbjct: 7   KPLLSDLVAQSGQVPSSHIRPVGDRPDLDN-VDHESGAGIPVIDLKQLDGPDRR 59


>02_05_0461 -
           29242711-29242864,29242992-29243059,29243500-29243589,
           29244026-29244733
          Length = 339

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 380 ATNRQQHRFGSYVDQREAHRAGG 312
           A NRQ  RF SYV+  E   AGG
Sbjct: 314 AYNRQLQRFLSYVNSEEKEAAGG 336


>07_03_0109 + 13502604-13503059,13503729-13504682
          Length = 469

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 381 SNQSAAAPIRLLCRSKGGTS-SRWEASVTWAALWTIGEAPA 262
           + Q  A  + L+CR+K GT+  R E+ V   A W   E PA
Sbjct: 346 ARQPLADTVELMCRAKAGTTRERVESMVDLLATWR--ERPA 384


>01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255
          Length = 190

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 268 CLPYRPQCCPSNRSFP 315
           C PY  +CCPS+ S P
Sbjct: 57  CRPYGSRCCPSSSSSP 72


>01_05_0035 + 17440828-17441364
          Length = 178

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 387 PPSN-QSAAAPIRLLCRSKGGTSSRWEASVTWAALWTI 277
           PPS   S+A P+  LCR  G  S R   +    ALW +
Sbjct: 33  PPSPLPSSAEPLHGLCRKPGAGSHRALVATPVRALWMV 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,424,643
Number of Sequences: 37544
Number of extensions: 289422
Number of successful extensions: 650
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)