Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30999x
(484 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51049| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 8e-04
SB_23180| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 8e-04
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25) 40 8e-04
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38) 40 0.001
SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023) 40 0.001
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 39 0.002
SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08) 38 0.003
SB_29299| Best HMM Match : RVT_1 (HMM E-Value=0.00029) 34 0.071
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12) 30 0.87
SB_52531| Best HMM Match : RVT_1 (HMM E-Value=1e-08) 29 2.7
SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 29 2.7
SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 29 2.7
SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044) 28 3.5
SB_3037| Best HMM Match : Homeobox (HMM E-Value=4.3e-27) 28 3.5
SB_43040| Best HMM Match : L_lactis_RepB_C (HMM E-Value=3.4) 28 4.6
SB_29934| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 28 4.6
SB_28986| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_48079| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_40145| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_45686| Best HMM Match : T-box (HMM E-Value=0) 27 8.1
SB_22364| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32) 27 8.1
SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 27 8.1
>SB_51049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 40.3 bits (90), Expect = 8e-04
Identities = 14/34 (41%), Positives = 28/34 (82%)
Frame = -1
Query: 367 SSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGT 266
++++ P++++G +E+V +F YLGSI+D++GGT
Sbjct: 29 NASNETPITVQGEALEEVDTFTYLGSILDNQGGT 62
>SB_23180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 40.3 bits (90), Expect = 8e-04
Identities = 14/34 (41%), Positives = 28/34 (82%)
Frame = -1
Query: 367 SSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGT 266
++++ P++++G +E+V +F YLGSI+D++GGT
Sbjct: 56 NASNETPITVQGEALEEVDTFTYLGSILDNQGGT 89
>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
Length = 1641
Score = 40.3 bits (90), Expect = 8e-04
Identities = 14/34 (41%), Positives = 28/34 (82%)
Frame = -1
Query: 367 SSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGT 266
++++ P++++G +E+V +F YLGSI+D++GGT
Sbjct: 401 NASNETPITVQGEALEEVDTFTYLGSILDNQGGT 434
Score = 37.1 bits (82), Expect = 0.008
Identities = 13/34 (38%), Positives = 27/34 (79%)
Frame = -1
Query: 367 SSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGT 266
++++ ++++G +E+V +F YLGSI+D++GGT
Sbjct: 30 NASNETXITVQGEALEEVDTFTYLGSILDNQGGT 63
>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
Length = 492
Score = 39.5 bits (88), Expect = 0.001
Identities = 14/34 (41%), Positives = 27/34 (79%)
Frame = -1
Query: 367 SSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGT 266
++++ P++++G +E+V +F YLGSI+D +GGT
Sbjct: 275 NASNETPITVQGEALEEVDTFTYLGSILDKQGGT 308
>SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 39.5 bits (88), Expect = 0.001
Identities = 14/34 (41%), Positives = 27/34 (79%)
Frame = -1
Query: 367 SSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGT 266
++++ P++++G +E+V +F YLGSI+D +GGT
Sbjct: 380 NASNETPITVQGETLEEVDTFTYLGSILDKQGGT 413
>SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023)
Length = 423
Score = 39.5 bits (88), Expect = 0.001
Identities = 14/34 (41%), Positives = 27/34 (79%)
Frame = -1
Query: 367 SSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGT 266
++++ P++++G +E+V +F YLGSI+D +GGT
Sbjct: 266 NASNETPITVQGEALEEVDTFTYLGSILDKQGGT 299
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/34 (41%), Positives = 26/34 (76%)
Frame = -1
Query: 367 SSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGT 266
+++ P++++G +E+V +F YLGSI+D +GGT
Sbjct: 167 NASSETPITVQGEALEEVDTFTYLGSILDKQGGT 200
>SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1054
Score = 38.3 bits (85), Expect = 0.003
Identities = 13/33 (39%), Positives = 27/33 (81%)
Frame = -1
Query: 367 SSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGG 269
++++ P++++G +E+V +F YLGSI+D++GG
Sbjct: 847 NASNETPITVQGEALEEVDTFTYLGSILDNQGG 879
>SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)
Length = 421
Score = 38.3 bits (85), Expect = 0.003
Identities = 13/33 (39%), Positives = 27/33 (81%)
Frame = -1
Query: 367 SSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGG 269
++++ P++++G +E+V +F YLGSI+D++GG
Sbjct: 203 NASNETPITVQGEALEEVDTFTYLGSILDNQGG 235
>SB_29299| Best HMM Match : RVT_1 (HMM E-Value=0.00029)
Length = 298
Score = 33.9 bits (74), Expect = 0.071
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = -1
Query: 373 IGSSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGTG 263
I ++ ++ + K + +E+V SF YLGSIV+ GG+G
Sbjct: 246 ISTTKNAGAIMCKDQPLERVESFTYLGSIVNTTGGSG 282
>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
Length = 1799
Score = 30.3 bits (65), Expect = 0.87
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1
Query: 367 SSTDSAPMSIKGRHIEQVGSFCYLGSIVDDR 275
S+ DS + IKG +++V F YLG + D+R
Sbjct: 1564 SNVDSFSIVIKGSTVKRVAEFKYLGVVFDER 1594
>SB_52531| Best HMM Match : RVT_1 (HMM E-Value=1e-08)
Length = 309
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 379 QPIGSSTDSAP-MSIKGRHIEQVGSFCYLGSIVDD 278
QP ST P ++I G ++ V SF YLGS + +
Sbjct: 215 QPAPDSTPQQPCITIDGTQLKNVDSFVYLGSTISN 249
>SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 629
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 379 QPIGSSTDSAP-MSIKGRHIEQVGSFCYLGSIVDD 278
QP ST P ++I G ++ V SF YLGS + +
Sbjct: 403 QPAPDSTPQQPCITIDGTQLKNVDSFVYLGSTISN 437
>SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 869
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 379 QPIGSSTDSAP-MSIKGRHIEQVGSFCYLGSIVDD 278
QP ST P ++I G ++ V SF YLGS + +
Sbjct: 663 QPAPDSTPQQPCITIDGTQLKNVDSFVYLGSTISN 697
>SB_41411| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
Length = 647
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 340 IKGRHIEQVGSFCYLGSIVDDRGGTGRPLVN 248
I G+ IE V F YLG+ V +GG + L N
Sbjct: 554 INGKEIEDVSEFTYLGAKVCRQGGGMKDLRN 584
>SB_3037| Best HMM Match : Homeobox (HMM E-Value=4.3e-27)
Length = 308
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 230 SSTSFQLQQRVVAMIYPVYRHSNNLACSYFYL 135
S TSF + R+ +IYP+ +H A +Y Y+
Sbjct: 5 SGTSFPSEARLCRLIYPLSQHICQYAHAYLYV 36
>SB_43040| Best HMM Match : L_lactis_RepB_C (HMM E-Value=3.4)
Length = 267
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 340 IKGRHIEQVGSFCYLGSIVDDRGGTGRPLVN 248
I G+ IE V F YLG+ V GG + L N
Sbjct: 81 INGKEIEDVSEFTYLGAKVFREGGGMKDLRN 111
>SB_29934| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 290
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 340 IKGRHIEQVGSFCYLGSIVDDRGGTGRPLVN 248
I G+ IE V F YLG+ V GG + L N
Sbjct: 81 INGKEIEDVSEFTYLGAKVCREGGGMKDLRN 111
>SB_28986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 340 IKGRHIEQVGSFCYLGSIVDDRGGTGRPLVN 248
I G+ IE V F YLG+ V GG + L N
Sbjct: 438 INGKEIEDVSEFTYLGAKVCREGGGMKDLRN 468
>SB_48079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 340 IKGRHIEQVGSFCYLGSIVDDRGGTGRPLVN 248
I G+ IE V F YLG+ V GG + L N
Sbjct: 168 INGKEIEDVSEFTYLGAKVCREGGGMKDLRN 198
>SB_40145| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 340 IKGRHIEQVGSFCYLGSIVDDRGGTGRPLVN 248
I G+ IE V F YLG+ V GG + L N
Sbjct: 14 INGKEIEDVSEFTYLGAKVCREGGGMKDLRN 44
>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
Length = 947
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 317 LLDVPPFDRHRSRIGA-AADWLLGGKCHQQSRCPLGLHPRS 436
LLD+ P D R R + WL+ GK + L +HP S
Sbjct: 652 LLDIVPVDDKRYRYAYHRSTWLVAGKADPPAPVRLYMHPDS 692
>SB_22364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -1
Query: 367 SSTDSAPMSIKGRHIEQVGSFCYLGSIVDDRGGTGRPLVNLDQCGVPQRRFNYNNGW 197
+S DS+P + +G +C++ D G R V+ ++ G ++ FN W
Sbjct: 117 NSLDSSPRFRVQSRLLPIGRWCHVAVTWDQVNGIARVYVDAEESG--RQSFNVTKSW 171
>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
Length = 337
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 317 LLDVPPFDRHRSRIGA-AADWLLGGKCHQQSRCPLGLHPRS 436
LLD+ P D R R + WL+ GK + L +HP S
Sbjct: 231 LLDIVPVDDKRYRYAYHRSTWLVAGKADPPAPVRLYMHPDS 271
>SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 370 GSSTDSAPMS--IKGRHIEQVGSFCYLGSIVDDRGGTGRPLVNLDQ 239
GSS D+ MS IK ++ + L SIV D GG +PL ++ Q
Sbjct: 374 GSSGDTFEMSAFIKEETVQIGKALTSLVSIVKDSGGRDKPLRSISQ 419
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 27.1 bits (57), Expect = 8.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 262 CRCLPYRPQCCPSNRSFPPARCASL 336
C+C+ Y P CP + P C S+
Sbjct: 891 CQCMGYTPFPCPHYQGGPACECKSM 915
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,132,767
Number of Sequences: 59808
Number of extensions: 315943
Number of successful extensions: 630
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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