Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30999x
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              25   0.56 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.56 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    24   0.74 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    24   0.74 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   0.74 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   6.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.1  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -2

Query: 357 IRLLCRSKGGTS-SRWE 310
           +RLLC   GGTS S+WE
Sbjct: 77  LRLLCSIAGGTSESQWE 93


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +2

Query: 293 AQVTEASHLLDVPPFDRHRSRIGAAADWLLGGKCHQQSRCPLG 421
           A +TE  H+   PP   H S     A  L GG C  + R   G
Sbjct: 505 ASLTEYHHV--APPSGHHASSAPLLAATLAGGLCPHRRRANSG 545


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 271 LPYRPQCCPSNR 306
           +P+ P CCPS+R
Sbjct: 350 VPFCPDCCPSDR 361


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 271 LPYRPQCCPSNR 306
           +P+ P CCPS+R
Sbjct: 350 VPFCPDCCPSDR 361


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 271 LPYRPQCCPSNR 306
           +P+ P CCPS+R
Sbjct: 350 VPFCPDCCPSDR 361


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -2

Query: 303 VTWAALWTIGEAPADR*ST*TSVEFLNVVSITTTG--GCHDLSGIPAFE*PSMFLFLS 136
           ++W + W   EA ADR     S+    V+++T  G     DL  +P       F+FLS
Sbjct: 230 LSWVSFWLNREATADR----VSLGITTVLTMTFLGLEARTDLPKVPYPTALDFFVFLS 283


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 179 PDKSWQPPVVV 211
           PDK W+P +V+
Sbjct: 105 PDKVWKPDIVL 115


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 271 LPYRPQCCPSNRSFPP 318
           +P +P C  + + FPP
Sbjct: 405 VPSKPMCAEAFQEFPP 420


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 212 IETTLRNSTLV*VD*RSAGASPIVHNAAQVTEASH 316
           +   LRN TLV +   +A     VH+AA    AS+
Sbjct: 78  VRRVLRNGTLVLLPFPAAAFRQDVHSAAYRCVASN 112


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 212 IETTLRNSTLV*VD*RSAGASPIVHNAAQVTEASH 316
           +   LRN TLV +   +A     VH+AA    AS+
Sbjct: 78  VRRVLRNGTLVLLPFPAAAFRQDVHSAAYRCVASN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,869
Number of Sequences: 438
Number of extensions: 3098
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)