Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30999x
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf...    30   0.94 
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf...    30   0.94 
At3g49210.1 68416.m05378 expressed protein                             29   1.2  
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro...    27   5.0  
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden...    27   6.6  
At3g62730.1 68416.m07047 expressed protein DESSICATION-RELATED P...    27   8.8  
At3g28360.1 68416.m03544 ABC transporter family protein similar ...    27   8.8  
At1g03180.1 68414.m00295 hypothetical protein                          27   8.8  

>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
           profile: PF00400 WD domain, G-beta repeat (7 copies)
          Length = 1135

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 134 QDKNKNMLGYSNAGIPDKSWQPPVVVIET 220
           Q   +N+LG +N+ +P + WQP   V+ T
Sbjct: 808 QKSERNLLGKANSNVPPQLWQPSSGVLMT 836


>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
           profile: PF00400 WD domain, G-beta repeat (7 copies)
          Length = 1137

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 134 QDKNKNMLGYSNAGIPDKSWQPPVVVIET 220
           Q   +N+LG +N+ +P + WQP   V+ T
Sbjct: 808 QKSERNLLGKANSNVPPQLWQPSSGVLMT 836


>At3g49210.1 68416.m05378 expressed protein
          Length = 518

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 390 LPPSNQSAAAPIRLLCRSKGGTSSRWEASVTWAALWTI 277
           LP  N+S++   RL+  S+G +   W   V W+A+  +
Sbjct: 191 LPNQNRSSSRSSRLMAGSRGDSRFLWLVMVIWSAIMLV 228


>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
           protease identical to SP|P43297 Cysteine proteinase
           RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
           thiol protease RD21A SP:P43297 from [Arabidopsis
           thaliana]
          Length = 462

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 274 PYRPQCCPSNRSFPPARCASL*ST*EPNRCCC 369
           P  P   P +   PP +C S  +  E N CCC
Sbjct: 358 PPNPGPSPPSPIKPPTQCDSYYTCPESNTCCC 389


>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00098: Zinc knuckle
          Length = 747

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 359 GAAADWLLGGKCHQQSRCP 415
           G++ DWL+GG+    SR P
Sbjct: 701 GSSDDWLIGGRSSSSSRAP 719


>At3g62730.1 68416.m07047 expressed protein DESSICATION-RELATED
           PROTEIN PCC13-62 PRECURSOR - Craterostigma plantagineum,
           PIR:E45509
          Length = 317

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 376 PIGSSTDSAPMSIKGRHIEQVG--SFCYLGSIVDDRGGTGRPLVNL 245
           PIG+   +    I  R IE+ G     +L +I D  GG  RPL+NL
Sbjct: 75  PIGAKKANLD-PITNRIIEEFGYQEIGHLRAITDMTGGIPRPLINL 119


>At3g28360.1 68416.m03544 ABC transporter family protein similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1158

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 266 RQTVSQLRPVWSSSTSFQLQQRVVAMIYPVYRHSNNLACSYFYL 135
           ++ ++  RP W  +    L   +   + P+Y +S+ L  S F+L
Sbjct: 575 KRLMAMNRPEWKHALCGCLSASLGGAVQPIYAYSSGLMISVFFL 618


>At1g03180.1 68414.m00295 hypothetical protein
          Length = 275

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 259 PLVNLDQCGVPQRRFNYNNGWLP*FIRY 176
           P +NL Q  +P+R F YN  ++P  +R+
Sbjct: 199 PTLNLPQHFLPKRDFRYNRKFVPSKLRF 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,390,680
Number of Sequences: 28952
Number of extensions: 210643
Number of successful extensions: 383
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)