Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30998
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   7.1  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    20   9.4  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 188 NRSQDSGCHEERASCSHHSNRPV 256
           N S  S C  E   C+H  N P+
Sbjct: 491 NESSVSNCENEYCECTHVVNIPL 513


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 235 GTARSFFVAAGVLGAITVSTPSEDNRDS 152
           G +    V +GV+  + V    E+N DS
Sbjct: 64  GESEMMVVTSGVIPGVAVDFLGENNDDS 91


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 114 RYALPENCNPD 146
           R A P NC+PD
Sbjct: 712 RLARPANCSPD 722


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 212 GSRSPGSDYGQH 177
           G+RSPG D+ ++
Sbjct: 14  GARSPGGDHSEN 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,661
Number of Sequences: 336
Number of extensions: 1451
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)