Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30998
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   3.1  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   4.1  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    25   4.1  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   7.1  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    24   9.4  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    24   9.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   9.4  

>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 84  HGYISRQFTRRYALPENCNPDT 149
           HG +S+   +R+ L  NC P T
Sbjct: 269 HGSLSKSIIKRFNLRGNCEPQT 290


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 218 ERASCSHHSNRPVRKEIKEPTAEVET 295
           +R +  + SN P  +E+ +PT ++ET
Sbjct: 503 KRTNAGYMSNSPWLREVADPTFKIET 528


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 191 RSQDSGCHE--ERASCSHHSNRPVRKEIKEPTAEVETNETKQ*LSDRCE 331
           RS  S  H   E    S HS RP +  +  PT+    N   Q +S + +
Sbjct: 77  RSSQSSSHPVFEETHWSKHSKRPGKLNVLTPTSPSNVNAEVQSISTKTQ 125


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 203 SGCHEERASCSHHSNRPVRKEIKEPTAEVETNET 304
           S C E   SC++  N    + ++EP +   T ET
Sbjct: 35  SRCKESEESCTYGVNEQAVQLLEEPLSRPITRET 68


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 408 KYDKAISLTSTHEECKQN*HTLHFFDSQRSESHCFVSLVSTSAVGSL 268
           +YD  I    + +EC+ N H     D   +E+   V+ +  SA+  L
Sbjct: 369 RYDPIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEIFDSAINQL 415


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 214 VAAGVLGAITVSTPSEDNRDSTVSGL 137
           V AGVL  +T ++PSE   + T + L
Sbjct: 214 VPAGVLNMVTANSPSEHGIELTTNPL 239


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -3

Query: 219  SSWQPESWERLRSARRQRTTEIQQCQD 139
            S W PE+ ER+R+ ++ +T  + + ++
Sbjct: 1176 SEWLPEAKERIRNIKKLKTDMLTKLEN 1202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,827
Number of Sequences: 5004
Number of extensions: 24536
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)