Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30998
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0483 - 8804021-8804485 45 3e-05
03_02_0484 + 8805053-8805538 44 4e-05
03_02_0478 + 8775892-8776377 44 6e-05
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 44 7e-05
01_01_0229 - 1943473-1943922 43 1e-04
03_02_0485 - 8808139-8808618 43 1e-04
01_01_0231 + 1951047-1951499 43 1e-04
01_01_0227 + 1933247-1933699 41 4e-04
02_01_0222 + 1450233-1450766 37 0.009
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 36 0.020
06_01_1017 - 7951985-7952425 33 0.14
11_02_0041 - 7669692-7670312 32 0.24
02_02_0077 - 6586638-6587165 31 0.32
03_05_0543 - 25404630-25405408,25405461-25405605 29 1.7
12_02_1174 - 26696869-26698191 28 4.0
03_05_0295 - 22856879-22856983,22857987-22858143,22858332-228583... 28 4.0
10_07_0141 + 13347648-13348331 27 5.3
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 27 9.2
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 27 9.2
>03_02_0483 - 8804021-8804485
Length = 154
Score = 44.8 bits (101), Expect = 3e-05
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Frame = +3
Query: 12 EEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPDTVESRLS 167
EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+ +++ +
Sbjct: 70 EEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASM- 128
Query: 168 SDGVLTVIAPRTPAATKNERAVPIT 242
+GVLTV P+ + +++ IT
Sbjct: 129 ENGVLTVTVPKEEPKKPDVKSIQIT 153
>03_02_0484 + 8805053-8805538
Length = 161
Score = 44.4 bits (100), Expect = 4e-05
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Frame = +3
Query: 12 EEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPDTVESRLS 167
EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+ +++ +
Sbjct: 77 EEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASM- 135
Query: 168 SDGVLTVIAPRTPAATKNERAVPIT 242
+GVLTV P+ + +++ +T
Sbjct: 136 ENGVLTVTVPKEEPKKPDVKSIQVT 160
>03_02_0478 + 8775892-8776377
Length = 161
Score = 44.0 bits (99), Expect = 6e-05
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Frame = +3
Query: 12 EEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPDTVESRLS 167
EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LP+N P+ +++ +
Sbjct: 77 EEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASM- 135
Query: 168 SDGVLTVIAPRTPAATKNERAVPIT 242
+GVLTV P+ A + +++ I+
Sbjct: 136 ENGVLTVTVPKEEAKKPDVKSIQIS 160
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 43.6 bits (98), Expect = 7e-05
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Frame = +3
Query: 12 EEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPDTVESRLS 167
EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D V++ L
Sbjct: 66 EEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGL- 124
Query: 168 SDGVLTVIAPRTPAATKNERAVPIT 242
+GVLTV P+ +A+ I+
Sbjct: 125 ENGVLTVTVPKAEVKKPEVKAIEIS 149
>01_01_0229 - 1943473-1943922
Length = 149
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Frame = +3
Query: 12 EEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPDTVESRLS 167
EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D V++ +
Sbjct: 65 EEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASM- 123
Query: 168 SDGVLTVIAPRTPAATKNERAVPIT 242
+GVLTV P+ +A+ I+
Sbjct: 124 ENGVLTVTVPKAEVKKPEVKAIEIS 148
>03_02_0485 - 8808139-8808618
Length = 159
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Frame = +3
Query: 12 EEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPDTVESRLS 167
EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LPEN P+ +++ +
Sbjct: 75 EEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASM- 133
Query: 168 SDGVLTVIAPRTPAATKNERAVPIT 242
+GVLTV P+ + +++ I+
Sbjct: 134 ENGVLTVTVPKEEPKKPDVKSIQIS 158
>01_01_0231 + 1951047-1951499
Length = 150
Score = 42.7 bits (96), Expect = 1e-04
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Frame = +3
Query: 12 EEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPDTVESRLS 167
EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D V++ +
Sbjct: 66 EEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGM- 124
Query: 168 SDGVLTVIAPRTPAATKNERAVPIT 242
+GVLTV P+ +A+ I+
Sbjct: 125 ENGVLTVTVPKAEVKKPEVKAIEIS 149
>01_01_0227 + 1933247-1933699
Length = 150
Score = 41.1 bits (92), Expect = 4e-04
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +3
Query: 51 VEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERA 230
V+GK++ER S +F RR+ LP D V + + +GVLTV P+ +A
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKEETKKPQLKA 145
Query: 231 VPIT 242
+PI+
Sbjct: 146 IPIS 149
>02_01_0222 + 1450233-1450766
Length = 177
Score = 36.7 bits (81), Expect = 0.009
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Frame = +3
Query: 12 EEISVKTADGYVI-VEGKHEERQDEHGY-------ISRQFTRRYALPENCNPDTVESRLS 167
EE+ V+ + V+ + G+ +E G S +F R LP N N D V + L
Sbjct: 93 EEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALD 152
Query: 168 SDGVLTVIAPRTPAATKNERAVPIT 242
+ GVLT+ P+ + R +PIT
Sbjct: 153 N-GVLTITIPKDNDRKPHARIIPIT 176
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 35.5 bits (78), Expect = 0.020
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Frame = +3
Query: 6 SPEEISVKTADGYVIVEGKHEERQDE------HGYISRQ----FTRRYALPENCNPDTVE 155
S EE+ V D +++ G+H++ + E G+ + + R ALP+ C+ V
Sbjct: 154 SREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVR 213
Query: 156 SRLSSDGVLTVIAPRTPAATK 218
+ L +GVL V P+T K
Sbjct: 214 AEL-KNGVLLVTVPKTEVERK 233
>06_01_1017 - 7951985-7952425
Length = 146
Score = 32.7 bits (71), Expect = 0.14
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +3
Query: 18 ISVKTADGYVIVEGKHEERQDEHGYISR----QFTRRYALPENCNPDTVESRLSSDGVLT 185
++V+ A + E + E +D +++ +F R ALP + + + + + GVLT
Sbjct: 65 LTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDN-GVLT 123
Query: 186 VIAPRTPAATKNERAVPI 239
V+ P+ PA + R PI
Sbjct: 124 VVVPKEPAPAR-PRTRPI 140
>11_02_0041 - 7669692-7670312
Length = 206
Score = 31.9 bits (69), Expect = 0.24
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 102 QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAV 233
+F RR+ +P + V +RL DGVLTV P+ P E V
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHRGREPRV 183
>02_02_0077 - 6586638-6587165
Length = 175
Score = 31.5 bits (68), Expect = 0.32
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 102 QFTRRYALPENCNPDTVESRLSSDGVLTV-IAPRTPAATKNERAVPI 239
+F RR+ LPE+ + D V + DGVLTV + + P K R V +
Sbjct: 117 KFMRRFPLPESADLDGVRAEY-KDGVLTVTVDKKPPPEPKKPRVVEV 162
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 102 QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPA-ATKNERAVPIT 242
+F + + LP +CN D + ++ ++ + + +TP+ T + P+T
Sbjct: 80 RFQKDFQLPADCNVDGIRAKFENEALTITLPKKTPSPLTPSPTPSPVT 127
>12_02_1174 - 26696869-26698191
Length = 440
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
F E++ V+ D + ++ E G +F + LP+NC+ D V +R D L
Sbjct: 33 FRKEQVRVQV-DNHGMLRATGERPPAARGGRWVRFKKDLRLPDNCDADAVRARF-DDHKL 90
Query: 183 TVIAPRTPAA 212
+ P AA
Sbjct: 91 IITLPLVAAA 100
>03_05_0295 -
22856879-22856983,22857987-22858143,22858332-22858396,
22858539-22858643
Length = 143
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 251 AGLSDGNSSLVLRGSRSPGSDYGQHAVRGQPRFNSVRIAVFRQSVTPREL 102
AG DG+ S L G R+PGS + G+P + + ++ TP+++
Sbjct: 20 AGGLDGDDSGGLGGGRTPGSRW------GKPPHGKINLTAWKNRFTPKDI 63
>10_07_0141 + 13347648-13348331
Length = 227
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 87 GYISRQFTRRYALPENCNPDTVESRLSSD-GVLTVIAPRTPAATKNERA 230
G+I+ +F RRY + ++ P+ E+ L+ D +L ++ A N RA
Sbjct: 31 GFITNKFGRRYGVGDHGTPE--EAALAHDRAILAILGAHASPAALNFRA 77
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +3
Query: 51 VEGKHEERQ----DEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATK 218
++ +H++ + +E + ++ + Y + + V + DGV A TPA K
Sbjct: 67 IQSQHDDLEAKFFEERAALEAKYQKMYEPLYSKRYEIVNGVVEVDGVTKEAADETPAEQK 126
Query: 219 NERAVP 236
E+ VP
Sbjct: 127 EEKGVP 132
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 257 GRAGLSDGNSSLVLRGSRSPGSDYGQHAVRG 165
GR+ + SS +RG PGS GQ VRG
Sbjct: 108 GRSLTNGAGSSRGMRGFVPPGSSSGQGGVRG 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,300,462
Number of Sequences: 37544
Number of extensions: 167858
Number of successful extensions: 652
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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