Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30998
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 60 8e-10
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 56 2e-08
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 54 7e-08
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 50 9e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 50 9e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 48 3e-06
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 3e-06
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 47 8e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 33 0.082
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.14
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 0.77
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 30 1.0
SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12) 30 1.0
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38) 28 3.1
SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5) 27 5.4
SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4) 27 7.2
SB_18848| Best HMM Match : WD40 (HMM E-Value=5.5e-07) 27 7.2
SB_47181| Best HMM Match : Pkinase (HMM E-Value=7.7e-31) 27 9.5
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 60.1 bits (139), Expect = 8e-10
Identities = 27/64 (42%), Positives = 42/64 (65%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
+ PEEIS+K G + ++GKH+ + EHGY + +F R Y LP+ + TV SR++ DG+L
Sbjct: 50 YRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLL 108
Query: 183 TVIA 194
+ A
Sbjct: 109 HIEA 112
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 111 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPI 239
R + LP++ + D++ SRL DG L + A R T +ER V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVNI 203
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 55.6 bits (128), Expect = 2e-08
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
F PEEI+ K +G + V G + + E G+ S++F R Y LPE + ++ +R++ DG+L
Sbjct: 16 FKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDESSISTRIAEDGML 74
Query: 183 TVIA-PRTPAATKNERAVPITQ 245
V A ++P AT +A P T+
Sbjct: 75 HVEALKKSPPATTENKA-PATK 95
Score = 50.8 bits (116), Expect = 5e-07
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPENCNPDTVESRLSSDGV 179
F PEE+ VK + V + E +EHG+ + RQF R + LP + DT+ RL DGV
Sbjct: 109 FKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVDMDTLVPRLGKDGV 166
Query: 180 LTVIAPRTP 206
L + A + P
Sbjct: 167 LYIEADKRP 175
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 53.6 bits (123), Expect = 7e-08
Identities = 26/64 (40%), Positives = 40/64 (62%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
+ PEEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V SR+S+ G L
Sbjct: 17 YRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRISNHGHL 75
Query: 183 TVIA 194
+ A
Sbjct: 76 HIEA 79
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
F PE I V+ ++V HE + H Y + F R++ LP + D++ +RL +G L
Sbjct: 107 FPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLDKEGKL 165
Query: 183 TVIAPRTPA 209
A ++ A
Sbjct: 166 HFEAKKSVA 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 50.0 bits (114), Expect = 9e-07
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
+ PEEIS K +G+V V+G+H + G+ ++F R +ALPE V++R+S+ G L
Sbjct: 17 YRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRISNHGQL 75
Query: 183 TVIA 194
+ A
Sbjct: 76 HIEA 79
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL +G L
Sbjct: 108 FPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 50.0 bits (114), Expect = 9e-07
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
+ PEEIS K +G+V V+G+H + G+ ++F R +ALPE V++R+S+ G L
Sbjct: 17 YRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRISNHGQL 75
Query: 183 TVIA 194
+ A
Sbjct: 76 HIEA 79
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL +G L
Sbjct: 108 FPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/64 (35%), Positives = 38/64 (59%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
+ PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S+ G L
Sbjct: 17 YRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRISNHGQL 75
Query: 183 TVIA 194
+ A
Sbjct: 76 HIEA 79
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/64 (35%), Positives = 38/64 (59%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
+ PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S+ G L
Sbjct: 251 YRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRISNHGQL 309
Query: 183 TVIA 194
+ A
Sbjct: 310 HIEA 313
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL +G L
Sbjct: 108 FPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLDKEGKL 166
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL +G L
Sbjct: 342 FPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLDKEGKL 400
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/64 (35%), Positives = 38/64 (59%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
+ PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S+ G L
Sbjct: 17 YRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRISNHGQL 75
Query: 183 TVIA 194
+ A
Sbjct: 76 HIEA 79
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL +G L
Sbjct: 108 FPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 46.8 bits (106), Expect = 8e-06
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
+ PEEIS K +G V V+G+H + G+ ++F R + LPE V++R+S+ G L
Sbjct: 18 YRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRISNHGQL 76
Query: 183 TVIA 194
+ A
Sbjct: 77 HIEA 80
Score = 40.3 bits (90), Expect = 7e-04
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVL 182
F PE I V+ ++V HE + H Y + F R++ LP + D++ +RL +G L
Sbjct: 108 FPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREVDMDSLTTRLDKEGKL 166
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 33.5 bits (73), Expect = 0.082
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 3 FSPEEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPE 131
F PEE+ VK + V + E +EHG+ + RQF R + LP+
Sbjct: 37 FKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPQ 78
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.14
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 60 KHEERQDEHGYISRQFTRRYAL 125
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1498
Score = 30.3 bits (65), Expect = 0.77
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 236 HHSNRPVRKEIKEPTAEVETNETKQ*LSDRCESKKCSVC 352
+H P KE E K+ LS+RCES KC +C
Sbjct: 1225 NHKKSPSCSSCKETFCS--EGELKEHLSNRCESLKCKIC 1261
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 54 EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLT 185
E K+EE DEHG I R+ T+ TV ++ DGV T
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTT 1230
>SB_38167| Best HMM Match : Collagen (HMM E-Value=7e-12)
Length = 299
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -1
Query: 272 P*SPSGRAGLSDGNSSLV----LRGSRSPGSDYGQHAVRGQPRFNSVRIAVFRQSVTPRE 105
P P G+ G +DG + ++G R P D G ++G+P +R A R ++PRE
Sbjct: 159 PAGPPGQPG-ADGKQGIRGPPGIKGERGPKGDVGPRGLKGEP--GRIRNAP-RAEISPRE 214
Query: 104 L 102
L
Sbjct: 215 L 215
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 24 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 131
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
Length = 468
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 135 CNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQT 248
CNPD+ ++ ++S AP TP AT V T T
Sbjct: 77 CNPDSGQTTVTSTAATPETAPPTPPATGAPPEVTTTPT 114
>SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)
Length = 289
Score = 27.5 bits (58), Expect = 5.4
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -3
Query: 333 DSQRSESHCFVSLVSTSAVGSLISFRTGRFE*WEQLARSSWQPESWERLRSARR-QRTTE 157
D + E+H F++ V S+ + F R + W E + S RR Q TT
Sbjct: 199 DPEWGEAHLFIAQV-VSSYETYQHFNDFRVHIYHSSRDGLWVKEWLLGMLSVRRFQVTTN 257
Query: 156 IQQCQDC 136
Q C+DC
Sbjct: 258 RQPCEDC 264
>SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4)
Length = 361
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 234 EQLARSSWQPESWERLRS--ARRQRTTEIQQCQD 139
E+ RS W+ SW+R+R +R++ + C+D
Sbjct: 91 EKKRRSRWKLPSWKRVRKFFSRKKNPKRTKSCED 124
>SB_18848| Best HMM Match : WD40 (HMM E-Value=5.5e-07)
Length = 508
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 66 EERQDEHGYISRQFTRRYALPENCNP 143
+ R+D HG++ R T L C+P
Sbjct: 249 QSRRDHHGHVDRALTNGAGLGNKCSP 274
>SB_47181| Best HMM Match : Pkinase (HMM E-Value=7.7e-31)
Length = 801
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 66 EERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTV 188
+E+QDE I R+ + P CN D+ ES S+ GV T+
Sbjct: 8 KEQQDELRNIRRKKSGNLKYPTPCNEDSFES--SNGGVSTL 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,010,211
Number of Sequences: 59808
Number of extensions: 201748
Number of successful extensions: 755
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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