Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30995
         (506 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    54   1e-06
UniRef50_Q00ZU4 Cluster: Chromosome 10 contig 1, DNA sequence; n...    36   0.53 
UniRef50_A6QZF0 Cluster: Predicted protein; n=1; Ajellomyces cap...    34   1.6  
UniRef50_UPI0000EB4332 Cluster: UPI0000EB4332 related cluster; n...    32   6.5  
UniRef50_Q930B4 Cluster: Putative uncharacterized protein; n=1; ...    32   6.5  
UniRef50_A3B4G5 Cluster: Putative uncharacterized protein; n=2; ...    32   6.5  
UniRef50_Q7SF15 Cluster: Putative uncharacterized protein NCU074...    32   8.6  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 54.4 bits (125), Expect = 1e-06
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = -2

Query: 340 RMGTRSVGRPPTRWTDDLVRTAGSRWMR 257
           R G RSVGRPPTRWTDDLV+ AGS WM+
Sbjct: 447 RAGRRSVGRPPTRWTDDLVKVAGSTWMQ 474



 Score = 36.3 bits (80), Expect = 0.40
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -1

Query: 254 AEDRIMWKALGKAYVQQWADKG 189
           A+DR +WK+LG+A+VQQW   G
Sbjct: 476 AQDRSLWKSLGEAFVQQWTSFG 497


>UniRef50_Q00ZU4 Cluster: Chromosome 10 contig 1, DNA sequence; n=2;
           Ostreococcus|Rep: Chromosome 10 contig 1, DNA sequence -
           Ostreococcus tauri
          Length = 317

 Score = 35.9 bits (79), Expect = 0.53
 Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 215 RPSPMPST*CGPPLPHPTTSRRAH--*VVSPPGWRTPH 322
           +PSP PST   PP  HPT   RA      SPP  R PH
Sbjct: 30  KPSPPPSTTIAPPRAHPTPRSRARSPKYRSPPKTRAPH 67


>UniRef50_A6QZF0 Cluster: Predicted protein; n=1; Ajellomyces
           capsulatus NAm1|Rep: Predicted protein - Ajellomyces
           capsulatus NAm1
          Length = 203

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 15/36 (41%), Positives = 26/36 (72%)
 Frame = +1

Query: 241 MRSSASASNDFPPCALSRQSTWLEDAPRSLYPSVYN 348
           + +++S S+DFPP  L+ QST L+ +P S++ + YN
Sbjct: 50  LANASSNSSDFPPPILANQSTALKYSPISVFQNSYN 85


>UniRef50_UPI0000EB4332 Cluster: UPI0000EB4332 related cluster; n=1;
           Canis lupus familiaris|Rep: UPI0000EB4332 UniRef100
           entry - Canis familiaris
          Length = 613

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 218 PSPMPST*CGPPLPHPTTSRRAH*VVSPPGWRTPHAP 328
           PSP      GPPLP   ++ R      PPGWR P +P
Sbjct: 56  PSPRLKATPGPPLPVVRSASRCP-PTPPPGWRPPPSP 91


>UniRef50_Q930B4 Cluster: Putative uncharacterized protein; n=1;
           Sinorhizobium meliloti|Rep: Putative uncharacterized
           protein - Rhizobium meliloti (Sinorhizobium meliloti)
          Length = 196

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 221 SPMPST*CGPPL--PHPTTSRRAH*VVSPPGWRTPHAPCTH 337
           +P PST   PP   P PTT RR H  +S P  R+P +  TH
Sbjct: 30  TPQPSTSAPPPTTEPAPTTPRRNHQPLSRP-TRSPRSRLTH 69


>UniRef50_A3B4G5 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 969

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 200 PTAGHRPSPMPST*CGPPLPHPTTSRRAH*VVSPPGWRTPHAPCTHP 340
           P++  RPSP   T  G P+   T S+RAH  +     +TP  P   P
Sbjct: 539 PSSSRRPSPQRQTVAGIPIVPFTVSKRAH--IKAESEKTPPRPAHSP 583


>UniRef50_Q7SF15 Cluster: Putative uncharacterized protein
           NCU07438.1; n=1; Neurospora crassa|Rep: Putative
           uncharacterized protein NCU07438.1 - Neurospora crassa
          Length = 636

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 197 LPTAGHRPSP-MPST*CGPPLPHPTTSRRAH*VVSPPGWRTPHAPCTH 337
           LPT+   P P +P+T   PP P P TS       +PP    P  P  H
Sbjct: 443 LPTSNAPPPPPLPATQAPPPPPLPATSAPPPPPPAPPAPPAPPLPAAH 490


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 398,522,880
Number of Sequences: 1657284
Number of extensions: 7221833
Number of successful extensions: 21339
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21254
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)