Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30995
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   0.70 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   2.8  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   6.5  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   6.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 197  LPTAGHRPSPMPST*CGPPLPHPTTS 274
            LP+A   P P+PST   PP+P PT++
Sbjct: 1026 LPSADAPPIPVPST--APPVPIPTST 1049


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 304 WLEDAPRSLYPSVYNI 351
           W ED PR LY S+Y+I
Sbjct: 250 WGEDKPRCLYTSLYHI 265


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 201 PLLDIGLPQCLPHNAVLRFRIQRLPAVRT 287
           PLLD    + LPH+  +  R++ LPA+ +
Sbjct: 421 PLLDTKYRKRLPHSPSMPSRVEFLPALES 449


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 218 PSPMPST*CGPPLPHPTTSRRAH*VVSPPGWRTPHAPCTHP 340
           PS +P+   GPPL HP  +  +  + S PG+     P   P
Sbjct: 131 PSQVPNM-FGPPLYHPAATAPSEFMPSIPGFGNLPNPAMPP 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,441
Number of Sequences: 5004
Number of extensions: 27845
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)