Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30995
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 32 0.23
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 30 1.2
01_05_0361 + 21377080-21377281,21378619-21378705,21379862-213801... 30 1.2
02_04_0468 - 23172561-23174201 29 1.6
12_02_1181 - 26732439-26732528,26732883-26732963,26733104-267331... 29 2.8
06_03_0395 - 20354713-20355570 28 3.7
04_03_0781 + 19572795-19573540,19573906-19573956,19574179-195742... 28 3.7
01_06_0300 + 28312590-28313939 28 3.7
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 28 5.0
03_05_0543 - 25404630-25405408,25405461-25405605 28 5.0
12_01_0742 - 6656464-6656739 27 8.7
06_01_0359 + 2578179-2578291,2578950-2579152,2579319-2579444,257... 27 8.7
04_04_1378 + 33105564-33105634,33105786-33106253,33106558-331065... 27 8.7
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 32.3 bits (70), Expect = 0.23
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 200 PTAGHRPSPMPST*CGPPLPHPTTSRRAH*VVSPPGWRTPHAPCTHP 340
P++ RPSP T G P+ T S+RAH + +TP P P
Sbjct: 539 PSSSRRPSPQRQTVAGIPIVPFTVSKRAH--IKAESEKTPPRPAHSP 583
>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 188 SLYLPTAGHRPSPMPST*CGPPLPHPTTSRRAH*VVSPPGWRTP 319
S +L TA +P+P PS G P P P+ S A WR+P
Sbjct: 1100 SSWLQTAKEQPAPPPSVTSGNPSPSPSPSPTA----PTNAWRSP 1139
>01_05_0361 +
21377080-21377281,21378619-21378705,21379862-21380134,
21380304-21380378,21380470-21380550,21380837-21381034,
21381145-21381234,21381310-21381467,21381619-21381741,
21381891-21382034,21382175-21382285,21382583-21382624,
21383043-21383261,21385319-21385627
Length = 703
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 248 PPLPHPTTSRRAH*VVSPPGWRTPHAPCTHP 340
PP+P P T+ +P G R H+P T P
Sbjct: 640 PPIPRPETNANQAVPAAPTGHRLTHSPTTPP 670
>02_04_0468 - 23172561-23174201
Length = 546
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 331 TRSVGRPPTRWTDDLVRTAGSRWMR 257
T ++GR P W DD RWMR
Sbjct: 409 TYAIGRDPASWGDDAAAFRPERWMR 433
>12_02_1181 -
26732439-26732528,26732883-26732963,26733104-26733163,
26733372-26733451,26733815-26733866,26733987-26734124,
26734203-26734466,26735895-26735952,26736153-26736262,
26736385-26736432,26736812-26736823
Length = 330
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 270 VVGCGSGGPHYVEGIGEGLCPAV 202
V+ G GPH ++GIG G P V
Sbjct: 221 VLSGGKPGPHKIQGIGAGFVPGV 243
>06_03_0395 - 20354713-20355570
Length = 285
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +2
Query: 197 LPTAGHRPSPMPST*CGPPLPHPTTSRRAH*VVSPPGWRTPHAPCT 334
LPT P P PS LP P + R SP W P A T
Sbjct: 236 LPTPSPSPPPCPSPPPAATLPDPPEAARIWRSPSPLPWAAPPAART 281
>04_03_0781 +
19572795-19573540,19573906-19573956,19574179-19574251,
19574772-19574876
Length = 324
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +2
Query: 191 LYLPTAGHRPSPMPST*CGPPLPHPTTSRRAH*VVSPPGWRTP 319
L+ T P+P P T P P PT H V+ PG P
Sbjct: 112 LFPSTTTTAPAPQPPTPTPTPTPTPTPRHHHHDVLVLPGMPPP 154
>01_06_0300 + 28312590-28313939
Length = 449
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 285 CARREVVGCGSGGPHYVEGI 226
CAR+E GCG G V+G+
Sbjct: 36 CARKEAYGCGEFGQELVDGL 55
>03_05_1124 +
30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 270 VVGCGSGGPHYVEGIGEGLCPAV 202
++ G GPH ++GIG G P V
Sbjct: 215 ILSGGRPGPHKIQGIGAGFVPGV 237
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 218 PSPMPST*CGPPLPHPTTSRRAH*VVSPPGWRTPHAP 328
PSP PS PP P R PG RTP +P
Sbjct: 119 PSPTPSPVTPPPQQPPQPEPRRPPAAPLPGVRTPPSP 155
>12_01_0742 - 6656464-6656739
Length = 91
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +2
Query: 206 AGHRPSPMPST*CG---PPLPHPTTSRRAH*VVSPPGWRTP 319
AG +P P CG PPLP RA + PPG R P
Sbjct: 43 AGLGSTPPPPDSCGRPPPPLPLDRAEGRAPQPLLPPGIRPP 83
>06_01_0359 +
2578179-2578291,2578950-2579152,2579319-2579444,
2579742-2579900,2580058-2580251,2580382-2580507
Length = 306
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 282 ARREVVGCGSGGPHYVEGIGEGLCP 208
A V+ G G H ++GIG GL P
Sbjct: 194 AESPVISGGEPGKHKIQGIGPGLIP 218
>04_04_1378 +
33105564-33105634,33105786-33106253,33106558-33106583,
33106741-33106771,33106890-33106977,33107094-33107338,
33107339-33107383,33107530-33107621,33107718-33107920,
33108215-33108496
Length = 516
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 247 SSASASNDFPPCALSRQSTWLE 312
++A+AS+ FPP ++ STWL+
Sbjct: 484 TAAAASSRFPPYIATQASTWLQ 505
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,820,369
Number of Sequences: 37544
Number of extensions: 218498
Number of successful extensions: 877
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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