Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30995
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)                     28   3.8  
SB_48294| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)               27   6.7  
SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         27   6.7  
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)              27   8.9  
SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                   27   8.9  

>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
          Length = 293

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +2

Query: 224 PMPST*CGPPLPHPTTSRRAH*VVSPPGWRTP 319
           P P    GPP+PHPT S     V  PPG   P
Sbjct: 130 PYPGA-AGPPMPHPTAS-----VYPPPGGYPP 155


>SB_48294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 200 PT-AGHRPSPMPST*CGPPLPHPTTSRRA 283
           PT A + P+P+P T   P  PHP  S +A
Sbjct: 219 PTFAKNAPTPIPLTSVAPESPHPQASAKA 247


>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
          Length = 242

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +2

Query: 191 LYLPTAG--HR---PSPMPST*CGPPLPHPTTSRRAH*VVSPPGWRTPHAPCT 334
           LY PTA   HR   PSP+  T   PP  H   S R H    P    +PH P T
Sbjct: 14  LYSPTAPRPHRPIAPSPLGPTTPSPPSHHGPISLRPHRPTIP----SPHDPIT 62


>SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 197 LPTAGHRPSPMPST*CGPPLPHPTTSRRA 283
           L  A + P+P+P T   P  PHP  S +A
Sbjct: 106 LTFAKNAPTPIPLTSVAPESPHPQASAKA 134


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 200 PT-AGHRPSPMPST*CGPPLPHPTTSRRA 283
           PT A + P+P+P T   P  PHP  S +A
Sbjct: 515 PTFAKNAPTPIPLTSVAPKSPHPQASAKA 543


>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1720

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 102  STHSTYIKAGRDSNSSDSIHISTVTLYVSS 13
            +T++ +  AGR SN+  S+ + TV ++VSS
Sbjct: 1050 ATNAAFGAAGRSSNAPASVLLRTVPVWVSS 1079


>SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)
          Length = 899

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +2

Query: 209 GHRPSPMPST*CGPPLPHPTTSRRAH*VVS---PPGWRTPHAPCT 334
           G RP+P P     P LP P    R   V+S   PP   T H  C+
Sbjct: 455 GIRPNPHPQRYLHPDLPLPVLVARGRVVLSTPIPPRRITRHRACS 499


>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 267 VGCGSGGPHYVEGIGEGLCPAVGR 196
           +GC   GPH+   + EG CP  G+
Sbjct: 482 LGCPWQGPHHELALHEGACPHPGK 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,195
Number of Sequences: 59808
Number of extensions: 222923
Number of successful extensions: 634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)