Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30995
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    30   0.84 
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    30   1.1  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    30   1.1  
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    29   2.6  
Z78415-10|CAB01676.2|  341|Caenorhabditis elegans Hypothetical p...    28   3.4  
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    28   3.4  

>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = +2

Query: 197 LPTAGHRPSPMPST*CGPPLPHPTTSRRAH*VVSPPGWRTPHAPCTHP 340
           +P A   P PMP   C PP P P        +  PP    P  PC  P
Sbjct: 39  MPCAAPMPMPMPMPVCPPPPPCPAQFCPPPPICPPP--PPPPMPCPPP 84


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 328 RSVGRPPTRWTDDLVRTAGSR 266
           R VGRPP RWTD L +   +R
Sbjct: 840 RPVGRPPMRWTDSLRKEITTR 860


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 328  RSVGRPPTRWTDDLVRTAGSR 266
            R VGRPP RWTD L +   +R
Sbjct: 1015 RPVGRPPMRWTDSLRKEITTR 1035


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 328 RSVGRPPTRWTDDLVRTAGSR 266
           R VGRPP RWTD L +   +R
Sbjct: 754 RPVGRPPMRWTDSLRKEITTR 774


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 328 RSVGRPPTRWTDDLVRTAGSR 266
           R VGRPP RWTD L +   +R
Sbjct: 366 RPVGRPPMRWTDSLRKEITTR 386


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
           protein C07A9.10 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 328 RSVGRPPTRWTDDLVRTAGSRWM 260
           R VG+PP RWTD L +   +R M
Sbjct: 15  RPVGKPPMRWTDSLRKEITTRDM 37


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 197 LPTAGHRPSPMPST*CGPP-LPHPTTSRRAH*VVSPPGWRTPHAPCTHP 340
           LP     P P P    GPP  PHP  SRR      P   R+PH+    P
Sbjct: 79  LPGPSGAP-PGPPHPSGPPHRPHPHPSRRPRPTRLPRPSRSPHSDAPEP 126


>Z78415-10|CAB01676.2|  341|Caenorhabditis elegans Hypothetical
           protein C17G1.7 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 249 GPHYVEGIGEGLCPAV 202
           GPH ++GIG G  PAV
Sbjct: 221 GPHKIQGIGAGFAPAV 236


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 328 RSVGRPPTRWTDDLVRTAGSR 266
           R VGRPP RW D L +   +R
Sbjct: 151 RPVGRPPMRWNDSLRKEVTTR 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,097,295
Number of Sequences: 27780
Number of extensions: 165422
Number of successful extensions: 418
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)