Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30994
(674 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 114 7e-26
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 87 9e-18
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 66 2e-11
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.040
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_38770| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 29 3.4
SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_34263| Best HMM Match : MORN (HMM E-Value=0.067) 28 6.0
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) 28 7.9
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 114 bits (274), Expect = 7e-26
Identities = 55/89 (61%), Positives = 66/89 (74%), Gaps = 6/89 (6%)
Frame = +3
Query: 273 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIQALDAILPPARPTDKLLRLLLQDV 434
NM+ +++MPWFK W +ER KE A G L + LD+ILPP+RP+ LRL LQDV
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112
Query: 435 YKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
YKIGGIGTVPVGRVETGVLKPGT+V+ P
Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTVVTFSP 141
Score = 99 bits (238), Expect = 2e-21
Identities = 44/54 (81%), Positives = 51/54 (94%)
Frame = +2
Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 673
F+P+NITTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+++RG VAGD KNNP
Sbjct: 139 FSPSNITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNP 192
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 87.4 bits (207), Expect = 9e-18
Identities = 38/77 (49%), Positives = 55/77 (71%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD VL+++A GEFE G + GQTREHA+LA T GVK L++ VNKMD ++E R+E
Sbjct: 246 ADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYE 305
Query: 181 EIKKEVSSYITTIGYNP 231
EIK +++ ++ +G+NP
Sbjct: 306 EIKVKLTPFLKKVGFNP 322
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/48 (64%), Positives = 37/48 (77%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 144
AD A+L+V A TGEFEAG GQTREHA+L +LGV QLIV +NK+D
Sbjct: 37 ADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 35.5 bits (78), Expect = 0.040
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Frame = -1
Query: 332 FTLHLPSLEPRHFG*RLQHVVSVPSRMGTKATAAGL*PIVVMYEETSFLISSNLGSLYGG 153
+ +H+ P G R+ H V+ S G ATA + P ++M + ++ + +GG
Sbjct: 418 YPIHIGPYGPPPSGIRVSHAVTTASAQGAAATATVMNPAIIMDQTRYIALTQQAAAGFGG 477
Query: 152 SVESILF--TPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAA 24
+ + P S + S + P L +P ++S +P +
Sbjct: 478 LATNCMAGDVPGSSSMMDVTTPSSGIYSM-PVLGVPPASSGIPVS 521
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 385 HLPAPLISSCVFSCKTYTKSVVLVPCPSAELKLVC*NQVPLCLCP 519
+L + SSC+ T + V +V CPS ++C ++V + LCP
Sbjct: 60 NLSHDVTSSCLCHVVTVSYCVCIVLCPSRVCIVLCPSRVCIVLCP 104
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 382 CHLPAPLISSCVFSCKTYTKSVVLVPCPSAELKLVC*NQVPLCLCP 519
CH+ C+ C + V +V CPS ++C ++V + LCP
Sbjct: 71 CHVVTVSYCVCIVLCPS---RVCIVLCPSRVCIVLCPSRVCIVLCP 113
>SB_38770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 486 VLKPGTIVSLPPRTSLLKSNLWRCTTKLSKKLYLET 593
+L PGTI ++ PR + LKS+L R +KL+ T
Sbjct: 69 LLGPGTIGTISPREAQLKSDLARLNCLSKEKLHKNT 104
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = -1
Query: 188 LISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLEIPASNSPVPA 27
L+S N L ++E IL TPT + + K C + P + NSP+P+
Sbjct: 806 LLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPSVTNGNSPIPS 865
Query: 26 AT 21
T
Sbjct: 866 GT 867
>SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 366 ALDAILPPARPTDKLLRLLLQDVYKIGGIGTVPVGRVETGVL 491
ALDAIL P ++ +LQ++ + GG+ GR E G++
Sbjct: 310 ALDAILQPLSNHPPVVVAILQELIRRGGLERALSGRDEEGLV 351
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +3
Query: 261 WHGDNMLEPSTKMPWFKGWQVERKE 335
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_34263| Best HMM Match : MORN (HMM E-Value=0.067)
Length = 757
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 273 CLRAIQNGHESNSSWVVANRRDV*GDFLLDFLKSGLTVWWFSGIHFVYSYDELF-DTEGE 97
C A G+ S + A R+ D + DFL + VW + + SYD+LF T GE
Sbjct: 18 CDLAKDAGNYVLSQILSAQSREAIVDNVHDFLITSEFVWILDQLCYPSSYDDLFWSTVGE 77
Query: 96 SEQG 85
+G
Sbjct: 78 DVKG 81
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 16 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 192
++VAA EF A ++KNG ++ F G + QL +G + M+ TE P P FE++K
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424
Query: 193 EVSS 204
S
Sbjct: 425 RTVS 428
>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
Length = 1064
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2
Query: 661 GVTSNITTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRFDFSSDVRGGKDTMVP 497
G T TTT V T ++SRYS++E + H + + + GG +P
Sbjct: 86 GQTDRRTTTHTATSVVENPYTSLISRYSYIEKLMTHHYTY---RHISGGDPLHIP 137
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,016,099
Number of Sequences: 59808
Number of extensions: 524058
Number of successful extensions: 1594
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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