Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30994
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 149 1e-36
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 149 1e-36
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 149 1e-36
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 104 7e-23
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 85 3e-17
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 82 4e-16
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 82 4e-16
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 40 0.002
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 40 0.002
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.035
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.035
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.035
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.14
U64836-4|AAG24059.1| 417|Caenorhabditis elegans Hypothetical pr... 29 3.0
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 28 5.3
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 28 5.3
Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical p... 28 7.0
U39472-11|AAP86619.2| 355|Caenorhabditis elegans Serpentine rec... 28 7.0
AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical... 28 7.0
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 7.0
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 9.2
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 149 bits (362), Expect = 1e-36
Identities = 67/99 (67%), Positives = 80/99 (80%)
Frame = +3
Query: 228 PSCCCFRAHSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIQALDAILPPARPTDK 407
P F SG++GDNMLE S+ MPWFKGW VERKEG A GK L++ALD+I+PP RPTD+
Sbjct: 151 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDR 210
Query: 408 LLRLLLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPPR 524
LRL LQDVYKIGGIGTVPVGRVETG++KPG +V+ P+
Sbjct: 211 PLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQ 249
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +2
Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 673
FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P
Sbjct: 246 FAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDP 299
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/46 (69%), Positives = 35/46 (76%)
Frame = +1
Query: 118 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYITTIGYNPAAVAFVPI 255
L+V NKMDSTEPP+SE RF EI EVS +I IGYNP AV FVPI
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPI 159
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 149 bits (362), Expect = 1e-36
Identities = 67/99 (67%), Positives = 80/99 (80%)
Frame = +3
Query: 228 PSCCCFRAHSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIQALDAILPPARPTDK 407
P F SG++GDNMLE S+ MPWFKGW VERKEG A GK L++ALD+I+PP RPTD+
Sbjct: 185 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDR 244
Query: 408 LLRLLLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPPR 524
LRL LQDVYKIGGIGTVPVGRVETG++KPG +V+ P+
Sbjct: 245 PLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQ 283
Score = 138 bits (335), Expect = 3e-33
Identities = 68/85 (80%), Positives = 71/85 (83%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD AVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFT 168
Query: 181 EIKKEVSSYITTIGYNPAAVAFVPI 255
EI EVS +I IGYNP AV FVPI
Sbjct: 169 EITNEVSGFIKKIGYNPKAVPFVPI 193
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +2
Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 673
FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P
Sbjct: 280 FAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDP 333
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 149 bits (362), Expect = 1e-36
Identities = 67/99 (67%), Positives = 80/99 (80%)
Frame = +3
Query: 228 PSCCCFRAHSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIQALDAILPPARPTDK 407
P F SG++GDNMLE S+ MPWFKGW VERKEG A GK L++ALD+I+PP RPTD+
Sbjct: 185 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDR 244
Query: 408 LLRLLLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPPR 524
LRL LQDVYKIGGIGTVPVGRVETG++KPG +V+ P+
Sbjct: 245 PLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQ 283
Score = 138 bits (335), Expect = 3e-33
Identities = 68/85 (80%), Positives = 71/85 (83%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD AVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFT 168
Query: 181 EIKKEVSSYITTIGYNPAAVAFVPI 255
EI EVS +I IGYNP AV FVPI
Sbjct: 169 EITNEVSGFIKKIGYNPKAVPFVPI 193
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +2
Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 673
FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P
Sbjct: 280 FAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDP 333
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 104 bits (249), Expect = 7e-23
Identities = 72/160 (45%), Positives = 86/160 (53%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD AVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R +
Sbjct: 109 ADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSD 165
Query: 181 EIKKEVSSYITTIGYNPAAVAFVPILDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENAS 360
I++ + + +P D TETTC C GSRDG + +K L E S
Sbjct: 166 TIQR-----LFHLSQSP---------DSTETTCLRSPRTCHGSRDGLLNARKETLPERPS 211
Query: 361 FKLSMLSCHLPAPLISSCVFSCKTYTKSVVLVPCPSAELK 480
+L S H A L VF + T+S L P S L+
Sbjct: 212 SRLLTPSSHHNAQLTDHSVFHSRMCTRSEELEPSQSDVLR 251
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 85.4 bits (202), Expect = 3e-17
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD AVL+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+
Sbjct: 211 ADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFK 270
Query: 181 EIKKEVSSYITTIGYNPAA-VAFVP 252
EI+ +++ ++ +G+NP + +VP
Sbjct: 271 EIEGKLTPFLRKLGFNPKTDITYVP 295
Score = 34.7 bits (76), Expect = 0.061
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 348 GKCLIQALDAILPP-ARPTDKLLRLLLQDVYKIGGIGTVPVGRVETGVLKPG-TIVSLPP 521
G C I+ +D +LP R + +R + + Y +GTV +G++E+G ++ G T+V +P
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMPN 375
Query: 522 RTSLLKSNLW 551
+ + +W
Sbjct: 376 KQPVQVLQIW 385
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +2
Query: 485 CVETRYHCVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
CV+ V P +V + + V GDN+ F +K + EL+ G++
Sbjct: 363 CVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFI 417
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 81.8 bits (193), Expect = 4e-16
Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD+A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+
Sbjct: 272 ADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFD 329
Query: 181 EIKKEVSSYIT-TIGYNPAAVAFVPI 255
EIK +S ++T G++ FVP+
Sbjct: 330 EIKNNLSVFLTRQAGFSKP--KFVPV 353
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 345 DGKCLIQALDAILPPARPTDKLLRLLLQDVYKIGGIGTVPVGRVETG 485
DG CL++ +D+ + P P+D LR+ + DV K+ V G++E+G
Sbjct: 371 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESG 417
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 81.8 bits (193), Expect = 4e-16
Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD+A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+
Sbjct: 290 ADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFD 347
Query: 181 EIKKEVSSYIT-TIGYNPAAVAFVPI 255
EIK +S ++T G++ FVP+
Sbjct: 348 EIKNNLSVFLTRQAGFSKP--KFVPV 371
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 345 DGKCLIQALDAILPPARPTDKLLRLLLQDVYKIGGIGTVPVGRVETG 485
DG CL++ +D+ + P P+D LR+ + DV K+ V G++E+G
Sbjct: 389 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESG 435
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/88 (31%), Positives = 45/88 (51%)
Frame = +1
Query: 4 DSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 183
D AVL++AA G E QT+EH +LA +GVK + + +NK D E E +
Sbjct: 133 DVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDL 181
Query: 184 IKKEVSSYITTIGYNPAAVAFVPILDGT 267
++ E ++ G+N A P++ G+
Sbjct: 182 VEMEARELLSLHGFNGDA---TPVIRGS 206
Score = 35.1 bits (77), Expect = 0.046
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 300 PWFKGWQVERKEGKADGKC---LIQALDAILPPARPTDKLLRLLLQDVYKIGGIGTVPVG 470
P +G + EG+ D C LI ALD++ P R + + I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 471 RVETGVLKPGTIVSL 515
+E GVLK G V +
Sbjct: 260 TLERGVLKKGDKVEI 274
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/88 (31%), Positives = 45/88 (51%)
Frame = +1
Query: 4 DSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEE 183
D AVL++AA G E QT+EH +LA +GVK + + +NK D E E +
Sbjct: 133 DVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDL 181
Query: 184 IKKEVSSYITTIGYNPAAVAFVPILDGT 267
++ E ++ G+N A P++ G+
Sbjct: 182 VEMEARELLSLHGFNGDA---TPVIRGS 206
Score = 35.1 bits (77), Expect = 0.046
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 300 PWFKGWQVERKEGKADGKC---LIQALDAILPPARPTDKLLRLLLQDVYKIGGIGTVPVG 470
P +G + EG+ D C LI ALD++ P R + + I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 471 RVETGVLKPGTIVSL 515
+E GVLK G V +
Sbjct: 260 TLERGVLKKGDKVEI 274
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 35.5 bits (78), Expect = 0.035
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 4 DSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRF 177
+ A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E R
Sbjct: 137 EGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR- 186
Query: 178 EEIKKEVSSYITTIGY 225
E ++ ++ + GY
Sbjct: 187 ELVEMDIREQLNEFGY 202
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 336 GKADGKCLIQALD-AILPPARPTDKLLRLLLQDVYKIGGIGTVPVGRVETGVLKPGTIVS 512
G+ K L++ LD + P R ++ + VY I G GTV G++E G+LK G +
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 285
Query: 513 L 515
+
Sbjct: 286 I 286
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 527 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 35.5 bits (78), Expect = 0.035
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 4 DSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRF 177
+ A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E R
Sbjct: 138 EGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR- 187
Query: 178 EEIKKEVSSYITTIGY 225
E ++ ++ + GY
Sbjct: 188 ELVEMDIREQLNEFGY 203
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 336 GKADGKCLIQALD-AILPPARPTDKLLRLLLQDVYKIGGIGTVPVGRVETGVLKPGTIVS 512
G+ K L++ LD + P R ++ + VY I G GTV G++E G+LK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 513 L 515
+
Sbjct: 287 I 287
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 527 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 35.5 bits (78), Expect = 0.035
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 4 DSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRF 177
+ A+L+VAA G QTREH LLA +GV ++V +NK+D E P +E R
Sbjct: 138 EGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR- 187
Query: 178 EEIKKEVSSYITTIGY 225
E ++ ++ + GY
Sbjct: 188 ELVEMDIREQLNEFGY 203
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 336 GKADGKCLIQALD-AILPPARPTDKLLRLLLQDVYKIGGIGTVPVGRVETGVLKPGTIVS 512
G+ K L++ LD + P R ++ + VY I G GTV G++E G+LK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 513 L 515
+
Sbjct: 287 I 287
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 527 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 137 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 9
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>U64836-4|AAG24059.1| 417|Caenorhabditis elegans Hypothetical
protein F10G2.3 protein.
Length = 417
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +1
Query: 223 YNPAAVAFVPILDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENASFKLSMLSCHLPAPL 402
Y+ A F P++D + +S+Q G+ G+W LTEN C LP
Sbjct: 109 YDNFASGF-PLVDIGKCVYYSVQ----GALTGKW------LTENCDLSSKAFMCELPTTF 157
Query: 403 ISSCVFSCKTY 435
SC+++ Y
Sbjct: 158 SDSCIYNYNGY 168
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 423 LQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPPRTS 530
+ D+Y + G+GT+ G + +G ++ I+ L P ++
Sbjct: 378 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSN 413
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 423 LQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPPRTS 530
+ D+Y + G+GT+ G + +G ++ I+ L P ++
Sbjct: 377 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSN 412
>Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = +2
Query: 488 VETRYHCVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
+ T C+ + +NI ++ + H+ + +++ GD G +K +++RRG++
Sbjct: 212 LHTAARCIGSISNILSQFQ----HYHRIYQSLCGDQAGILLKKNQKRQVRRGWI 261
>U39472-11|AAP86619.2| 355|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 34 protein.
Length = 355
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = +2
Query: 482 WCVETRYHCVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 616
WC Y C+F P I T K + + + +N N K+
Sbjct: 280 WCYTYTYACMFLPIIILTSTKIISLQRREKINGLTKENQNENQKS 324
>AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = +2
Query: 488 VETRYHCVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
+ T C+ + +NI ++ + H+ + +++ GD G +K +++RRG++
Sbjct: 212 LHTAARCIGSISNILSQFQ----HYHRIYQSLCGDQAGILLKKNQKRQVRRGWI 261
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 154 PPYSEPRFEEIKKEVSSYITTIGYNPAAVAFVPILDGTETTCWSLQPKCLGSRDGRWS 327
P P+ EE+KKEV + I P++ A V L+ T +L P L R W+
Sbjct: 3581 PTQYAPKAEELKKEVEAAKAVIANAPSSDAHVQQLEQAVATAETLIPD-LEERARLWN 3637
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 154 PPYSEPRFEEIKKEVSSYITTIGYNPAAVAFVPILDGTETTCWSLQPKCLGSRDGRWS 327
P P+ EE+KKEV + I P++ A V L+ T +L P L R W+
Sbjct: 4535 PTQYAPKAEELKKEVEAAKAVIANAPSSDAHVQQLEQAVATAETLIPD-LEERARLWN 4591
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 154 PPYSEPRFEEIKKEVSSYITTIGYNPAAVAFVPILDGTETTCWSLQPKCLGSRDGRWS 327
P P+ EE+KKEV + I P++ A V L+ T +L P L R W+
Sbjct: 5438 PTQYAPKAEELKKEVEAAKAVIANAPSSDAHVQQLEQAVATAETLIPD-LEERARLWN 5494
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 154 PPYSEPRFEEIKKEVSSYITTIGYNPAAVAFVPILDGTETTCWSLQPKCLGSRDGRWS 327
P P+ EE+KKEV + I P++ A V L+ T +L P L R W+
Sbjct: 6341 PTQYAPKAEELKKEVEAAKAVIANAPSSDAHVQQLEQAVATAETLIPD-LEERARLWN 6397
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 154 PPYSEPRFEEIKKEVSSYITTIGYNPAAVAFVPILDGTETTCWSLQPKCLGSRDGRWS 327
P P+ EE+KKEV + I P++ A V L+ T +L P L R W+
Sbjct: 7244 PTQYAPKAEELKKEVEAAKAVIANAPSSDAHVQQLEQAVATAETLIPD-LEERARLWN 7300
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 154 PPYSEPRFEEIKKEVSSYITTIGYNPAAVAFVPILDGTETTCWSLQPKCLGSRDGRW 324
P P+ EE+KKEV + I P++ A V L+ T +L P L R W
Sbjct: 8147 PTQYAPKAEELKKEVEAAKAVIANAPSSDAHVQQLEQAVATAETLIPD-LEERASIW 8202
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
A S V +A + AGI QT EH LLA ++I+ +NK D E +
Sbjct: 91 AASTVFDMAIVIIDVVAGIQP--QTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAK 148
Query: 181 EIKKEVSS 204
+++K + S
Sbjct: 149 KVRKGLKS 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,799,383
Number of Sequences: 27780
Number of extensions: 377955
Number of successful extensions: 1142
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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