Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30994
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   171   5e-45
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   171   5e-45
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   164   6e-43
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   164   6e-43
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    90   2e-20
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.7  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  171 bits (416), Expect = 5e-45
 Identities = 77/98 (78%), Positives = 83/98 (84%)
 Frame = +3

Query: 228 PSCCCFRAHSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIQALDAILPPARPTDK 407
           P+   F   SGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLI+ALDAILPP RPTDK
Sbjct: 128 PAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDK 187

Query: 408 LLRLLLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
            LRL LQDVYKIGGIGTVPVGRVETGVLKPG +V+  P
Sbjct: 188 ALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAP 225



 Score =  164 bits (399), Expect = 6e-43
 Identities = 81/85 (95%), Positives = 81/85 (95%)
 Frame = +1

Query: 1   ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
           AD AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFE
Sbjct: 52  ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFE 111

Query: 181 EIKKEVSSYITTIGYNPAAVAFVPI 255
           EIKKEVSSYI  IGYNPAAVAFVPI
Sbjct: 112 EIKKEVSSYIKKIGYNPAAVAFVPI 136



 Score =  107 bits (258), Expect = 7e-26
 Identities = 50/52 (96%), Positives = 51/52 (98%)
 Frame = +2

Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 667
           FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN
Sbjct: 223 FAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 274


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  171 bits (416), Expect = 5e-45
 Identities = 77/98 (78%), Positives = 83/98 (84%)
 Frame = +3

Query: 228 PSCCCFRAHSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIQALDAILPPARPTDK 407
           P+   F   SGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLI+ALDAILPP RPTDK
Sbjct: 185 PAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDK 244

Query: 408 LLRLLLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
            LRL LQDVYKIGGIGTVPVGRVETGVLKPG +V+  P
Sbjct: 245 ALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAP 282



 Score =  164 bits (399), Expect = 6e-43
 Identities = 81/85 (95%), Positives = 81/85 (95%)
 Frame = +1

Query: 1   ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
           AD AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFE
Sbjct: 109 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFE 168

Query: 181 EIKKEVSSYITTIGYNPAAVAFVPI 255
           EIKKEVSSYI  IGYNPAAVAFVPI
Sbjct: 169 EIKKEVSSYIKKIGYNPAAVAFVPI 193



 Score =  113 bits (271), Expect = 2e-27
 Identities = 52/54 (96%), Positives = 53/54 (98%)
 Frame = +2

Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 673
           FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP
Sbjct: 280 FAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 333


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  164 bits (399), Expect = 6e-43
 Identities = 72/89 (80%), Positives = 80/89 (89%)
 Frame = +3

Query: 255 SGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIQALDAILPPARPTDKLLRLLLQDV 434
           SGWHGDNMLEPS K PW+KGW+VERK+G ADGK LI+ALDAILPP+RPTDK LRL LQDV
Sbjct: 194 SGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPTDKALRLPLQDV 253

Query: 435 YKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
           YKIGGIGTVPVGRVETG+LKPG +V+  P
Sbjct: 254 YKIGGIGTVPVGRVETGILKPGMLVTFAP 282



 Score =  154 bits (374), Expect = 6e-40
 Identities = 76/85 (89%), Positives = 78/85 (91%)
 Frame = +1

Query: 1   ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
           AD AVLIVAAG GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PPYSE RFE
Sbjct: 109 ADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFE 168

Query: 181 EIKKEVSSYITTIGYNPAAVAFVPI 255
           EIKKEVSSYI  IGYN A+VAFVPI
Sbjct: 169 EIKKEVSSYIKKIGYNTASVAFVPI 193



 Score =  105 bits (253), Expect = 3e-25
 Identities = 48/54 (88%), Positives = 51/54 (94%)
 Frame = +2

Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 673
           FAPA +TTEVKSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN P
Sbjct: 280 FAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQP 333


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  164 bits (399), Expect = 6e-43
 Identities = 81/85 (95%), Positives = 81/85 (95%)
 Frame = +1

Query: 1   ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
           AD AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE RFE
Sbjct: 36  ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFE 95

Query: 181 EIKKEVSSYITTIGYNPAAVAFVPI 255
           EIKKEVSSYI  IGYNPAAVAFVPI
Sbjct: 96  EIKKEVSSYIKKIGYNPAAVAFVPI 120



 Score =  108 bits (260), Expect = 4e-26
 Identities = 46/60 (76%), Positives = 50/60 (83%)
 Frame = +3

Query: 228 PSCCCFRAHSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIQALDAILPPARPTDK 407
           P+   F   SGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLI+ALDAILPP RPTDK
Sbjct: 112 PAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDK 171


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 89.8 bits (213), Expect = 2e-20
 Identities = 40/44 (90%), Positives = 42/44 (95%)
 Frame = +2

Query: 542 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 673
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN P
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQP 44


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 198 DFLLDFLKSGLTVWWFSGIH 139
           D L  F++SG+T  W S I+
Sbjct: 54  DKLSHFIESGITAIWLSPIN 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,586
Number of Sequences: 438
Number of extensions: 4001
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)