Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30994
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 122 3e-28
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 122 3e-28
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 122 3e-28
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 122 3e-28
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 82 3e-16
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 72 4e-13
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 46 3e-05
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 44 7e-05
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 31 0.93
At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329... 30 1.2
At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329... 30 1.2
At2g31060.1 68415.m03790 elongation factor family protein contai... 30 1.2
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ... 30 1.6
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 29 2.8
At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family pr... 29 3.8
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ... 29 3.8
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ... 29 3.8
At4g37170.1 68417.m05262 pentatricopeptide (PPR) repeat-containi... 28 5.0
At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase fa... 28 6.6
At1g19430.1 68414.m02421 dehydration-responsive protein-related ... 28 6.6
At1g08300.1 68414.m00916 expressed protein 28 6.6
At3g55530.1 68416.m06166 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 27 8.7
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 27 8.7
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ... 27 8.7
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 122 bits (293), Expect = 3e-28
Identities = 58/85 (68%), Positives = 69/85 (81%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD AVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++
Sbjct: 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYD 168
Query: 181 EIKKEVSSYITTIGYNPAAVAFVPI 255
EI KEVSSY+ +GYNP + FVPI
Sbjct: 169 EIIKEVSSYLKKVGYNPDKIPFVPI 193
Score = 100 bits (239), Expect = 1e-21
Identities = 51/89 (57%), Positives = 62/89 (69%)
Frame = +3
Query: 255 SGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIQALDAILPPARPTDKLLRLLLQDV 434
SG+ GDNM+E ST + W+KG L++ALD I P RP+DK LRL LQDV
Sbjct: 194 SGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDV 241
Query: 435 YKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
YKIGGIGTVPVGRVETG++KPG +V+ P
Sbjct: 242 YKIGGIGTVPVGRVETGMIKPGMVVTFAP 270
Score = 94.3 bits (224), Expect = 7e-20
Identities = 41/54 (75%), Positives = 50/54 (92%)
Frame = +2
Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 673
FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P
Sbjct: 268 FAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDP 321
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 122 bits (293), Expect = 3e-28
Identities = 58/85 (68%), Positives = 69/85 (81%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD AVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++
Sbjct: 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYD 168
Query: 181 EIKKEVSSYITTIGYNPAAVAFVPI 255
EI KEVSSY+ +GYNP + FVPI
Sbjct: 169 EIIKEVSSYLKKVGYNPDKIPFVPI 193
Score = 100 bits (239), Expect = 1e-21
Identities = 51/89 (57%), Positives = 62/89 (69%)
Frame = +3
Query: 255 SGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIQALDAILPPARPTDKLLRLLLQDV 434
SG+ GDNM+E ST + W+KG L++ALD I P RP+DK LRL LQDV
Sbjct: 194 SGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDV 241
Query: 435 YKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
YKIGGIGTVPVGRVETG++KPG +V+ P
Sbjct: 242 YKIGGIGTVPVGRVETGMIKPGMVVTFAP 270
Score = 94.3 bits (224), Expect = 7e-20
Identities = 41/54 (75%), Positives = 50/54 (92%)
Frame = +2
Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 673
FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P
Sbjct: 268 FAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDP 321
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 122 bits (293), Expect = 3e-28
Identities = 58/85 (68%), Positives = 69/85 (81%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD AVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++
Sbjct: 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYD 168
Query: 181 EIKKEVSSYITTIGYNPAAVAFVPI 255
EI KEVSSY+ +GYNP + FVPI
Sbjct: 169 EIIKEVSSYLKKVGYNPDKIPFVPI 193
Score = 100 bits (239), Expect = 1e-21
Identities = 51/89 (57%), Positives = 62/89 (69%)
Frame = +3
Query: 255 SGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIQALDAILPPARPTDKLLRLLLQDV 434
SG+ GDNM+E ST + W+KG L++ALD I P RP+DK LRL LQDV
Sbjct: 194 SGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDV 241
Query: 435 YKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
YKIGGIGTVPVGRVETG++KPG +V+ P
Sbjct: 242 YKIGGIGTVPVGRVETGMIKPGMVVTFAP 270
Score = 94.3 bits (224), Expect = 7e-20
Identities = 41/54 (75%), Positives = 50/54 (92%)
Frame = +2
Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 673
FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P
Sbjct: 268 FAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDP 321
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 122 bits (293), Expect = 3e-28
Identities = 58/85 (68%), Positives = 69/85 (81%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD AVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++
Sbjct: 109 ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYD 168
Query: 181 EIKKEVSSYITTIGYNPAAVAFVPI 255
EI KEVSSY+ +GYNP + FVPI
Sbjct: 169 EIIKEVSSYLKKVGYNPDKIPFVPI 193
Score = 100 bits (239), Expect = 1e-21
Identities = 51/89 (57%), Positives = 62/89 (69%)
Frame = +3
Query: 255 SGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIQALDAILPPARPTDKLLRLLLQDV 434
SG+ GDNM+E ST + W+KG L++ALD I P RP+DK LRL LQDV
Sbjct: 194 SGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDV 241
Query: 435 YKIGGIGTVPVGRVETGVLKPGTIVSLPP 521
YKIGGIGTVPVGRVETG++KPG +V+ P
Sbjct: 242 YKIGGIGTVPVGRVETGMIKPGMVVTFAP 270
Score = 94.3 bits (224), Expect = 7e-20
Identities = 41/54 (75%), Positives = 50/54 (92%)
Frame = +2
Query: 512 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP 673
FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P
Sbjct: 268 FAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDP 321
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 82.2 bits (194), Expect = 3e-16
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE 180
AD VL+++A GEFE G + GQTREH LA TLGV +LIV VNKMD +S+ R++
Sbjct: 203 ADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLIVVVNKMDDPTVNWSKERYD 262
Query: 181 EIKKEVSSYITTIGYNPAA-VAFVPI 255
EI++++ ++ GYN V F+PI
Sbjct: 263 EIEQKMVPFLKASGYNTKKDVVFLPI 288
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +3
Query: 348 GKCLIQALDAILPPARPTDKLLRLLLQDVYKIGGIGTVPVGRVETGVLKPGTIVSLPPRT 527
G + LD+I P R + R+ + D +K +GTV +G+VE+G ++ G + + P
Sbjct: 310 GPSFFEVLDSIEIPPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSIREGDSLVVMPNK 367
Query: 528 SLLK 539
+K
Sbjct: 368 EQVK 371
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 71.7 bits (168), Expect = 4e-13
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 ADSAVLIVAAGTGEFEAGISK-NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRF 177
AD+A+L++ A G FEAG GQTREHA + GV+Q+IV +NKMD YS+ RF
Sbjct: 341 ADAAILVIDASVGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAINKMDIV--GYSKERF 398
Query: 178 EEIKKEVSSYITTIGYNPAAVAFVPI 255
+ IK+ V S++ + + +++ ++P+
Sbjct: 399 DLIKQHVGSFLQSCRFKDSSLTWIPL 424
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 357 LIQALDAILP-PARPTDKLLRLLLQDVYKIGGIGTVPVGRVETGVLKPGTIVSL 515
L+ A+D +P P R DK + ++DV+ I G GTV GR+E GV+K G V +
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVGEEVEI 302
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 70 QTREHALLAFTLGVKQLIVGVNKMDSTEPP 159
QT+EH LLA +GV L+ +NK+D + P
Sbjct: 170 QTKEHILLARQVGVPSLVCFLNKVDVVDDP 199
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 527 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
+ + V VEM + L GDNVG ++ + ++++RG V
Sbjct: 312 LKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMV 352
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 44.4 bits (100), Expect = 7e-05
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 357 LIQALDAILP-PARPTDKLLRLLLQDVYKIGGIGTVPVGRVETGVLKPGTIVSL 515
L+ A+D +P P R T+ L ++DV+ I G GTV GRVE G +K G V L
Sbjct: 269 LMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDL 322
Score = 34.7 bits (76), Expect = 0.057
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 4 DSAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE- 180
D A+L+V+ G QT+EH LLA +GV ++V +NK D + E
Sbjct: 167 DGAILVVSGADGPMP-------QTKEHILLAKQVGVPDMVVFLNKEDQVDDAELLELVEL 219
Query: 181 EIKKEVSSY 207
E+++ +SSY
Sbjct: 220 EVRELLSSY 228
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 539 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 649
V VEM + L EA+ GDNVG ++ + +++RG V
Sbjct: 333 VTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMV 369
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 30.7 bits (66), Expect = 0.93
Identities = 23/84 (27%), Positives = 35/84 (41%)
Frame = +1
Query: 187 KKEVSSYITTIGYNPAAVAFVPILDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENASFK 366
+ V IG AAV FV I C ++QP R + K A + +
Sbjct: 1210 RSNVQDLTMVIGAIYAAVVFVGI-----NNCSTVQPMVAVERTVFYREKAAGMYSAIPYA 1264
Query: 367 LSMLSCHLPAPLISSCVFSCKTYT 438
+S ++C LP LI + +S Y+
Sbjct: 1265 ISQVTCELPYVLIQTTYYSLIIYS 1288
>At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329:
Protein of unknown function (DUF731)
Length = 442
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 145 STEPPYSEPRFEEIKKEVSSYITTIGYNPAAVAFVPILDG 264
+TE + P+ E K E+S++I IG+ V F P DG
Sbjct: 63 ATEKESTPPKKIEYKPEISNWINLIGFVEQPVQFGPCSDG 102
>At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329:
Protein of unknown function (DUF731)
Length = 440
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 145 STEPPYSEPRFEEIKKEVSSYITTIGYNPAAVAFVPILDG 264
+TE + P+ E K E+S++I IG+ V F P DG
Sbjct: 63 ATEKESTPPKKIEYKPEISNWINLIGFVEQPVQFGPCSDG 102
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +3
Query: 309 KGW--QVERKEGKADGKCLIQALDAIL----PPARPTDKLLRLLLQDVYKIGGIGTVPVG 470
+GW K+ D K + LDA++ PP D+ +L+ + K +G + G
Sbjct: 82 EGWASSTYTKDPPVDAKNMADLLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTG 141
Query: 471 RVETGVLKPGTIVS 512
RV +GV++ G V+
Sbjct: 142 RVTSGVVRVGDRVN 155
>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
ornithine--oxo-acid aminotransferase, putative similar
to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
(Ornithine--oxo-acid aminotransferase) [Aspergillus
nidulans] {Emericella nidulans}; contains Pfam profile
PF00202: aminotransferase, class III
Length = 475
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 100 TLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYITTIGYNPAAVAF 246
T GV++ G+ + +S PP S R E++ E S++ Y+P V F
Sbjct: 18 TAGVRRSYGGLPQSNSKSPPSSSQRLMELESEFSAH----NYHPVPVVF 62
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 330 KEGKADGKCLIQALDAILPPARPTDK 407
KE +A G + QALD +PP RP K
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRK 99
>At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 566
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 438 KIGGIGTVPVGRVETGVLKPGTIVSLPPRTSLLKS 542
K GI T+ + + GVL+ G++ SLP L+KS
Sbjct: 200 KSAGIRTIVMVPTDAGVLELGSVWSLPENIGLVKS 234
>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 458 GTNTTDFVYVLQEKTQELISGAGRWQDSIESLNEAFSVSFA--FFTLH 321
G +T D++ L+E+ QEL +G G+ + ++ +S A F T H
Sbjct: 289 GISTYDYIVALREQEQELEAGGGQQSPQMSMISSFTGLSSASSFNTFH 336
>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
contains Pfam profile: PF01529: DHHC zinc finger domain
Length = 596
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 458 GTNTTDFVYVLQEKTQELISGAGRWQDSIESLNEAFSVSFA--FFTLH 321
G +T D++ L+E+ QEL +G G+ + ++ +S A F T H
Sbjct: 289 GISTYDYIVALREQEQELEAGGGQQSPQMSMISSFTGLSSASSFNTFH 336
>At4g37170.1 68417.m05262 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 691
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 178 EEIKKEVSSYITTIGYNPAAVAFVPILDGTETTCWSLQ 291
EE+ K+V Y+T +G++P + A ++D T C +++
Sbjct: 335 EELGKQVHGYMTRVGFDPYSFASSSLVD-MYTKCGNIE 371
>At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0, SP|O43520], Mus musculus [SP|P98200,
SP|P70704], {Bos taurus} SP|Q29449; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1184
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 46 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 204
E+G +TR+H G++ LI+ ++D E R E K VS+
Sbjct: 629 ESGRKYEKETRDHVNEYADAGLRTLILAYRELDENEYEVFTERISEAKNSVSA 681
>At1g19430.1 68414.m02421 dehydration-responsive protein-related low
similarity to early-responsive to dehydration stress
ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 724
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 479 NWCVETRYHCVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNV 619
NW ET + F P N TT +V + E +QE VP G NV+ V
Sbjct: 302 NWVNETGEYLSF-PQNQTTFNGNVLQYLEFIQEMVPDIEWGKNVRIV 347
>At1g08300.1 68414.m00916 expressed protein
Length = 509
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 160 YSEPRFEEIKKEVSSYITTIGYNPAAVAFVPILDGTETTCWS-LQPKCLGSRDGRWSVK 333
Y++ F+++ ++ ++I YN + ++ +L+ S L+ G+RDG WS++
Sbjct: 8 YNDCIFKKLLLDIQIIFSSINYNIMKIIYLQMLNQKRFLFSSFLRRPMQGNRDGSWSLR 66
>At3g55530.1 68416.m06166 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 273
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +3
Query: 213 DDWL--QPSC--CCFRAHSGWHGDNMLE 284
D WL Q +C C FRAHSGW + ++
Sbjct: 239 DPWLRQQGTCPVCKFRAHSGWQEQDEID 266
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +1
Query: 217 IGYNPAAVAFVPILDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENASFKLSMLSCHLPA 396
IG AA+ FV I C ++QP R + + A + + +S ++C LP
Sbjct: 1247 IGALYAAIIFVGI-----NNCSTVQPMVAVERTVFYRERAAGMYSAMPYAISQVTCELPY 1301
Query: 397 PLISSCVFSCKTY 435
LI + +S Y
Sbjct: 1302 VLIQTVYYSLIVY 1314
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 279 LEPSTKMPWFKGWQVERKEGKADGKCLIQALDA 377
++ T W KG++V EGK CL +A++A
Sbjct: 189 IDSGTLSKWTKGFKVSGMEGKNVVACLNEAMEA 221
>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 612
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 501 YLVSTHQFQLCRRARYQYHRFCIRLA 424
Y + +HQF C++ Y H C L+
Sbjct: 334 YPIVSHQFYHCKKCNYSLHEVCAGLS 359
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,127,713
Number of Sequences: 28952
Number of extensions: 360925
Number of successful extensions: 1194
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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