Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30991
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   148   9e-37
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   148   9e-37
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   1.2  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.5  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   1.5  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    26   4.7  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   6.2  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   8.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.2  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.2  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    25   8.2  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  148 bits (358), Expect = 9e-37
 Identities = 64/78 (82%), Positives = 71/78 (91%)
 Frame = +3

Query: 18  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 198 SSEALEAGRICCNKYLVK 251
           +SEALEA RIC NKYLVK
Sbjct: 61  TSEALEAARICANKYLVK 78



 Score =  136 bits (329), Expect = 3e-33
 Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
 Frame = +2

Query: 257 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 436
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140

Query: 437 SDRWKAQVIEALRRAKFKFPGRQKSTYQRS-GVSQ 538
            D  +A  IEALRR ++KFPG+Q+    +  G SQ
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +1

Query: 478 CQVQVPRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 633
           CQ + P   ++ VSKKWGF++Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  148 bits (358), Expect = 9e-37
 Identities = 64/78 (82%), Positives = 71/78 (91%)
 Frame = +3

Query: 18  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 198 SSEALEAGRICCNKYLVK 251
           +SEALEA RIC NKYLVK
Sbjct: 61  TSEALEAARICANKYLVK 78



 Score =  136 bits (328), Expect = 4e-33
 Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
 Frame = +2

Query: 257 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 436
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140

Query: 437 SDRWKAQVIEALRRAKFKFPGRQKSTYQRS-GVSQ 538
            D  +A  IEALRR ++KFPG+Q+    +  G SQ
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +1

Query: 478 CQVQVPRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 633
           CQ + P   ++ VSKKWGF++Y RDE+ + R  G +  DGC  ++  + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 42  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 218
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 219 G 221
           G
Sbjct: 94  G 94


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -1

Query: 391  STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHADMELILSAFFTRYLLQQIRPA 215
            +T +LAKR T PSL P  S+    H I  +  ++ KS A+   IL  F  +   +Q    
Sbjct: 957  TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAND--ILHLFKKKAKSEQSNAK 1014

Query: 214  SKASELSCSYSSDT 173
            S +S +  S    T
Sbjct: 1015 SSSSSIKESKKMKT 1028


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +3

Query: 120  DLGKKRANVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNAERI 266
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN +++
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQKL 1086


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 29/86 (33%), Positives = 40/86 (46%)
 Frame = +1

Query: 55  KINRIRNRGSVGVYLIPRSVSSIWVRRERTLTTFHCACTWCPTNMNS*AQRLWRQDVSAA 234
           KI R+R+  SV + L   S+S  W  R   L   H   T   +  +  A RL  + VS  
Sbjct: 340 KIKRLRSEPSVSLTL---SIS--WYERFEKL--MHAQNTMLRSAFSHVA-RLPMETVSQL 391

Query: 235 ISTS*RTRKGSVPYPHETSPFPRYPH 312
           +S    T    +P P ETSP P+ P+
Sbjct: 392 LSHYTETISQYLP-PSETSPIPKTPN 416


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 75  SRFCRGVPDPKIRIFDLGKKRANVDDFP-LCVHLVSDE 185
           S FC   PDPK       K  A+ DD P +  H+ S++
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 99  DPKIRIFDLGKKRANVDDFPLCV-HLVSDEYEQLSSEALEA 218
           DPK+R+F    KRA   +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 260 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 364
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 85  VGVYLIPRSVSSIWV 129
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 517 IRRLLTSGELELGTAQSLDDLCLPPVTRA 431
           ++++L +G   + T + +DDLCL  +  A
Sbjct: 280 VKKILNAGANVILTTKGIDDLCLKSIIEA 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,099
Number of Sequences: 5004
Number of extensions: 69068
Number of successful extensions: 234
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)