Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30991
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 141 4e-34
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 140 1e-33
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 137 9e-33
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.2
02_02_0317 + 8893593-8894207 31 1.2
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.5
07_03_0604 + 19903654-19904598 28 6.5
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 28 6.5
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 6.5
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409... 28 8.6
10_08_0309 + 16666047-16666543,16666626-16666836,16666925-166670... 28 8.6
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 141 bits (342), Expect = 4e-34
Identities = 66/92 (71%), Positives = 74/92 (80%)
Frame = +2
Query: 248 KERGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 427
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 428 VRSSDRWKAQVIEALRRAKFKFPGRQKSTYQR 523
VR + EALRRAKFKFPGRQK + R
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSR 169
Score = 140 bits (338), Expect = 1e-33
Identities = 61/80 (76%), Positives = 68/80 (85%)
Frame = +3
Query: 18 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 197
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 198 SSEALEAGRICCNKYLVKNA 257
SSEALEA RI CNKY+ KNA
Sbjct: 61 SSEALEAARIACNKYMTKNA 80
Score = 52.0 bits (119), Expect = 5e-07
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +1
Query: 493 PRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 633
P K+ S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 140 bits (338), Expect = 1e-33
Identities = 65/87 (74%), Positives = 71/87 (81%)
Frame = +2
Query: 248 KERGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 427
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 428 VRSSDRWKAQVIEALRRAKFKFPGRQK 508
VR EALRRAKFKFPGRQK
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPGRQK 160
Score = 118 bits (283), Expect = 6e-27
Identities = 51/73 (69%), Positives = 60/73 (82%)
Frame = +3
Query: 39 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 218
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 219 GRICCNKYLVKNA 257
RI CNKY+ K+A
Sbjct: 64 ARIACNKYMTKSA 76
Score = 47.6 bits (108), Expect = 1e-05
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1
Query: 493 PRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDG 597
P K+ S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 137 bits (331), Expect = 9e-33
Identities = 64/87 (73%), Positives = 71/87 (81%)
Frame = +2
Query: 248 KERGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 427
K GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 428 VRSSDRWKAQVIEALRRAKFKFPGRQK 508
VR D A EALRRAKFKFPGRQ+
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQR 471
Score = 132 bits (319), Expect = 3e-31
Identities = 57/76 (75%), Positives = 65/76 (85%)
Frame = +3
Query: 30 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEA 209
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 210 LEAGRICCNKYLVKNA 257
LEA RI CNKY+ K+A
Sbjct: 372 LEAARIACNKYMAKHA 387
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +1
Query: 493 PRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 627
P +V S KWGFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 420 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 328
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>02_02_0317 + 8893593-8894207
Length = 204
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -1
Query: 664 GSQPEPSSKRREVHVP---GGTARCSRHWRGGP 575
G +P P++ R +HVP GG R RHWR P
Sbjct: 3 GRRPRPAAGTR-IHVPQPCGGEIRWERHWRPDP 34
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 374 GKPQGTVARVRIGQPIMSVRSSD 442
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>07_03_0604 + 19903654-19904598
Length = 314
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 619 PGGTARCSRHWRGGPLHAASQTHH 548
PGG R R G P+H A + HH
Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHH 103
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 313 DADNVERVKSHADMELILSAFFTRYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 149
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 148 S 146
+
Sbjct: 203 A 203
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 141 NVDDFPLCVHLVSDEYEQLSSEALEAGR-ICC 233
NV++ P + L+ DE +++ E L AGR I C
Sbjct: 679 NVEEIPTSMDLMKDENDKIQLEILTAGRNIAC 710
>12_01_1045 -
10739396-10739402,10739968-10740239,10740361-10740941,
10741566-10742586
Length = 626
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/76 (27%), Positives = 29/76 (38%)
Frame = -1
Query: 553 HHVHTL*NPTSLIRRLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANTCYSTLRLA 374
H HT P L RR+L G + L L L V H HD + YS ++
Sbjct: 513 HSGHT---PLDLSRRMLPRGMKYTANTEELIYLTLKQVGSEHYHDRRDHIEEIYSRRVVS 569
Query: 373 KRTTHPSLEPISSSAR 326
K L+ + S +
Sbjct: 570 KEDLAEELDKMQESTQ 585
>10_08_0309 +
16666047-16666543,16666626-16666836,16666925-16667035,
16667130-16667918
Length = 535
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 429 CALVTGGRHRSSRLCAVPSSSSPDVKSLRIK 521
C G R++ + A+PSSSS SLR+K
Sbjct: 14 CFATAGDARRAASVVAMPSSSSSATTSLRMK 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,312,209
Number of Sequences: 37544
Number of extensions: 526280
Number of successful extensions: 1576
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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